Merge pull request #2389 from marehr/io_explicit_record_type_nr3

[FEATURE] seqan3::sam_record
seqan · Feb 28, 2021 · be6f2c1 · be6f2c1 · vercel · Feb 28, 2021
2 parents 6f39b37 + d59e290
commit be6f2c1
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Showing 8 changed files with 859 additions and 8 deletions.
diff --git a/include/seqan3/io/alignment_file/input.hpp b/include/seqan3/io/alignment_file/input.hpp
@@ -32,11 +32,11 @@
 #include <seqan3/io/alignment_file/format_bam.hpp>
 #include <seqan3/io/alignment_file/format_sam.hpp>
 #include <seqan3/io/alignment_file/misc.hpp>
+#include <seqan3/io/alignment_file/record.hpp>
 #include <seqan3/io/detail/in_file_iterator.hpp>
 #include <seqan3/io/detail/misc_input.hpp>
 #include <seqan3/io/detail/record.hpp>
 #include <seqan3/io/exception.hpp>
-#include <seqan3/io/record.hpp>
 #include <seqan3/io/stream/concept.hpp>
 #include <seqan3/range/decorator/gap_decorator.hpp>
 #include <seqan3/range/views/repeat_n.hpp>
@@ -518,8 +518,8 @@ class alignment_file_input
                   "of alignment_file_input::field_ids for the accepted values.");
 
     //!\brief The type of the record, a specialisation of seqan3::record; acts as a tuple of the selected field types.
-    using record_type = record<detail::select_types_with_ids_t<field_types, field_ids, selected_field_ids>,
-                               selected_field_ids>;
+    using record_type = sam_record<detail::select_types_with_ids_t<field_types, field_ids, selected_field_ids>,
+                                   selected_field_ids>;
     //!\}
 
     /*!\name Range associated types