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[MISC] rename view:: to views:: #1251

Merged
merged 1 commit into from
Sep 10, 2019
Merged

[MISC] rename view:: to views:: #1251

merged 1 commit into from
Sep 10, 2019

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h-2
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@h-2 h-2 commented Sep 9, 2019

Only concatenated_sequences has interesting changes

@h-2 h-2 requested a review from rrahn September 9, 2019 16:19
@h-2 h-2 force-pushed the infra/rename_views branch 2 times, most recently from f014963 to ac3cacb Compare September 9, 2019 23:25
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codecov bot commented Sep 9, 2019

Codecov Report

Merging #1251 into master will increase coverage by 0.04%.
The diff coverage is 99.61%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1251      +/-   ##
==========================================
+ Coverage   97.31%   97.36%   +0.04%     
==========================================
  Files         221      221              
  Lines        8874     8912      +38     
==========================================
+ Hits         8636     8677      +41     
+ Misses        238      235       -3
Impacted Files Coverage Δ
include/seqan3/range/views/repeat.hpp 100% <ø> (ø)
...e/seqan3/alignment/matrix/alignment_coordinate.hpp 100% <ø> (ø) ⬆️
include/seqan3/range/views/take_until.hpp 94.54% <ø> (ø)
...qan3/alignment/pairwise/alignment_configurator.hpp 100% <ø> (ø) ⬆️
...de/seqan3/range/container/bitcompressed_vector.hpp 100% <ø> (ø) ⬆️
include/seqan3/io/alignment_file/header.hpp 100% <ø> (ø) ⬆️
include/seqan3/range/views/detail.hpp 100% <ø> (ø)
include/seqan3/range/views/istreambuf.hpp 100% <ø> (ø)
include/seqan3/search/algorithm/search.hpp 78.94% <ø> (ø) ⬆️
include/seqan3/range/views/single_pass_input.hpp 100% <100%> (ø)
... and 69 more

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I took the initiative and tried to spot possible alignment errors, or include issues, e.g. includes that are not used by snippets etc. That is of course not part of this PR, but otherwise it will be hard to track down these things. So better fix them right now.

include/seqan3/core/parallel/detail/spin_delay.hpp Outdated Show resolved Hide resolved
include/seqan3/range/container/concatenated_sequences.hpp Outdated Show resolved Hide resolved
include/seqan3/range/container/concatenated_sequences.hpp Outdated Show resolved Hide resolved
include/seqan3/range/container/concatenated_sequences.hpp Outdated Show resolved Hide resolved
include/seqan3/range/container/concatenated_sequences.hpp Outdated Show resolved Hide resolved
test/unit/range/views/view_take_test.cpp Outdated Show resolved Hide resolved
test/unit/range/views/view_take_until_test.cpp Outdated Show resolved Hide resolved
@@ -26,7 +26,7 @@ TYPED_TEST_CASE_P(bi_fm_index_cursor_collection_test);
TYPED_TEST_P(bi_fm_index_cursor_collection_test, begin)
{
std::vector<std::vector<dna4>> text{"AACGATCGGA"_dna4, "AACGATCGGA"_dna4};
auto rev_text = text | view::deep{std::view::reverse} | view::deep{view::persist};
auto rev_text = text | views::deep{std::views::reverse} | views::deep{views::persist};
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potentially missing includes for deep and persist

@@ -37,7 +37,7 @@ inline void test_search_hamming(auto it, text_t const & text, auto const & searc
using char_t = typename text_t::value_type;

uint64_t const pos = std::rand() % (text.size() - query_length + 1);
text_t const orig_query = text | view::slice(pos, pos + query_length);
text_t const orig_query = text | views::slice(pos, pos + query_length);
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potentially missing includes for slice view

@h-2 h-2 merged commit 2c42a07 into seqan:master Sep 10, 2019
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2 participants