Merge pull request #8 from cokelaer/main

Update CI and tests
sequana · Dec 17, 2023 · 74564e5 · 74564e5
2 parents 750d557 + 05a5be2
commit 74564e5
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diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -31,24 +31,27 @@ jobs:
       uses: actions/checkout@v2
 
     - name: conda/mamba
-      uses: mamba-org/provision-with-micromamba@main
+      uses: mamba-org/setup-micromamba@v1
       with:
+          micromamba-version: '1.3.1-0'
           environment-file: environment.yml
-          extra-specs: |
+          create-args: |
             python=${{ matrix.python }}
+          cache-environment: true
+          cache-downloads: true
 
     - name: install package itself
-      shell: bash -l {0}
+      shell: bash -el {0}
       run: |
         pip install .
 
     - name: Install dependencies
-      shell: bash -l {0}
+      shell: bash -el {0}
       run: |
         pip install coveralls pytest-cov pytest pytest-xdist
 
     - name: testing
-      shell: bash -l {0}
+      shell: bash -el {0}
       run: |
         pytest -v --cov-report term-missing --cov=sequana_pipelines.bioconvert
 

diff --git a/test/test_main.py b/test/test_main.py
@@ -45,7 +45,6 @@ def test_standalone_script():
 
     results = runner.invoke(main, args)
     assert results.exit_code == 0
-    m.main()
 
 
 def test_full():