Merge pull request #17 from cokelaer/main

rename file and update __init__ (version)

README.rst

@@ -116,7 +116,8 @@ Changelog
 ========= =======================================================================
 Version   Description
 ========= =======================================================================
-1.5.1     * swictch working directory to fastq instead of demultiplex(regression)
+1.5.2     * rename requirements.txt into tools.txt; update __init__
+1.5.1     * switch working directory to fastq instead of demultiplex(regression)
 1.5.0     * Uses click and new sequana_pipetools, add multiqc
 1.4.0     * Implement demultiplexing of single cell ATAC seq data with
             cellranger.

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "sequana-demultiplex"
-version = "1.5.1"
+version = "1.5.2"
 description = "Pipeline that runs bcl2fastq and ease demultiplexing of Sequencing data"
 authors = ["Sequana Team"]
 license = "BSD-3"

sequana_pipelines/demultiplex/__init__.py

@@ -1,6 +1,12 @@
-import pkg_resources
-try:
-    version = pkg_resources.require("sequana_demultiplex")[0].version
-except:
-    version = ">=0.8.0"
+import importlib.metadata as metadata
 
+
+def get_package_version(package_name):
+    try:
+        version = metadata.version(package_name)
+        return version
+    except metadata.PackageNotFoundError:
+        return f"{package_name} not found"
+
+
+version = get_package_version("sequana-demultiplex")

sequana_pipelines/demultiplex/tools.txt

@@ -0,0 +1,3 @@
+bcl2fastq
+dot
+cellranger-atac