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update doc
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@cokelaer
cokelaer committed Dec 16, 2020
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Expand Up @@ -73,7 +73,7 @@ This pipelines requires the following executable(s):
Details
~~~~~~~~~

This pipeline runs **downsampling** in parallel on the input fastq or fasta files (paired or not).
This pipeline runs **downsampling** in parallel on the input fastq or fasta files (paired or not). If paired, the one-to-one mapping is conserved.

It can take as input a set of FastQ files, or FastA files. by
default, the pipeline with randomly select 1000 entries from each input files.
Expand All @@ -87,7 +87,8 @@ and change the value if needed (default is 10%)::

--downsampling-percent 20

Note that input FastQ and FastA files can be gzipped. Output files are gzipped.
Note that input FastQ can be gzipped. Output files are gzipped. FastA input
files must be compressed for now



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