Merge pull request #9 from cokelaer/main

update workflows
sequana · May 23, 2023 · 7b39d4c · 7b39d4c
2 parents 9318dae + d346676
commit 7b39d4c
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Showing 4 changed files with 7 additions and 10 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -16,7 +16,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.7, 3.8, 3.9]
+        python: [3.8, 3.9, '3.10']
       fail-fast: false
 
 
@@ -41,7 +41,7 @@ jobs:
 
     - name: conda
       run: |
-        conda install -c conda-forge -c bioconda --quiet -y python=${{ matrix.python }} 
+        conda install -c conda-forge -c bioconda --quiet -y python=${{ matrix.python }}
 
     - name: Install dependencies
       run: |
@@ -53,7 +53,7 @@ jobs:
 
     - name: testing
       run: |
-        pytest -v --cov-report term-missing --cov=sequana_pipelines.coverage
+        pytest -v --cov-report term-missing --cov=sequana_pipelines.multicov
 
     - name: coveralls
       run: |

diff --git a/requirements.txt b/requirements.txt
@@ -1,2 +1,2 @@
-sequana>=0.14.1
-sequana_pipetools>=0.9.2
+sequana>=0.15.1
+sequana_pipetools>=0.12.4
diff --git a/sequana_pipelines/multicov/multicov.rules b/sequana_pipelines/multicov/multicov.rules
@@ -64,7 +64,6 @@ rule multiqc:
        f"{sequana_wrapper_branch}/wrappers/multiqc"
 
 
-
 rule sequana_coverage:
     input:
         bed=manager.getrawdata(),
@@ -84,8 +83,6 @@ rule sequana_coverage:
     wrapper:
         f"{sequana_wrapper_branch}/wrappers/sequana_coverage"
 
-#expected_output += expand("{sample}/sequana_coverage/sequana_coverage.html", sample=manager.samples)
-
 onsuccess:
     pass
 

diff --git a/setup.py b/setup.py
@@ -2,7 +2,7 @@
 
 _MAJOR               = 1
 _MINOR               = 1
-_MICRO               = 0
+_MICRO               = 1
 version              = '%d.%d.%d' % (_MAJOR, _MINOR, _MICRO)
 release              = '%d.%d' % (_MAJOR, _MINOR)
 
@@ -22,9 +22,9 @@
           'Intended Audience :: Science/Research',
           'License :: OSI Approved :: BSD License',
           'Operating System :: OS Independent',
-          'Programming Language :: Python :: 3.7',
           'Programming Language :: Python :: 3.8',
           'Programming Language :: Python :: 3.9',
+          'Programming Language :: Python :: 3.10',
           'Topic :: Software Development :: Libraries :: Python Modules',
           'Topic :: Scientific/Engineering :: Bio-Informatics',
           'Topic :: Scientific/Engineering :: Information Analysis',