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update workflow to use fastp wrapper #24

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merged 5 commits into from
Nov 15, 2022
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coveralls commented Nov 14, 2022

Pull Request Test Coverage Report for Build 3471350695

  • 3 of 5 (60.0%) changed or added relevant lines in 1 file are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage decreased (-0.5%) to 68.395%

Changes Missing Coverage Covered Lines Changed/Added Lines %
sequana_pipelines/rnaseq/main.py 3 5 60.0%
Totals Coverage Status
Change from base Build 3397049059: -0.5%
Covered Lines: 409
Relevant Lines: 598

💛 - Coveralls

@cokelaer cokelaer changed the title update workflow to use mamba update workflow to use fastp wrapper Nov 15, 2022
.github/workflows/main.yml Outdated Show resolved Hide resolved
fix typo

Update main.yml

fix typo

update workflow to use mamba

update environ
updqte singularity

Update fastp and singularity

Fix fastp container link

Fixing CI for singularity

fixing singu
@cokelaer cokelaer merged commit b1cf1d0 into sequana:main Nov 15, 2022
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4 participants