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update doc
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cokelaer committed Sep 20, 2017
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Expand Up @@ -213,7 +213,30 @@ http://sequana.readthedocs.io/en/master/tutorial.html#new-in-v0-10



Singularity
-----------------

If you use the singularity container and get this kind of error::

singularity shell sequana-sequana-master.img
ERROR : Base home directory does not exist within the container: /pasteur
ABORT : Retval = 255

it means the container does not know about the Base home directory.

If you have sudo access, add the missing path as follows::

sudo singularity shell --writable sequana-sequana-master.img
mkdir /pasteur
exit

If you do not have sudo permissions, copy the image on a computer where you have
such permission, use the same code as above and copy back the new image on the
computer where you had the issue.

Finally, try to use the container again using this code::

singularity shell sequana-sequana-master.img



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