Merge pull request #19 from cokelaer/main

Update worflows

.github/workflows/main.yml

@@ -37,10 +37,16 @@ jobs:
         sudo apt install graphviz
         sudo apt install libgl1 libgl1-mesa-glx libegl1 libgles2-mesa-dev libgl1-mesa-dev
 
-    - name: Install dependencies
+
+     - name: install package itself
+       run: |
+         pip install poetry
+         poetry install
+
+    - name: testing
       run: |
-        pip install .[testing]
-        pip install sequana_fastqc
+        poetry run pytest --cov-report term --cov=sequana_pipetools
+
     - name: Lint with flake8
       run: |
         pip install flake8

.github/workflows/pypi.yml

@@ -1,38 +1,39 @@
 name: Publish to PyPI
-on:
+on: 
+  workflow_dispatch:
   push:
     tags:
       - '*'
 
 jobs:
   build-n-publish:
     name: Build and publish to PyPI and TestPyPI
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-20.04
     steps:
-    - uses: actions/checkout@master
-    - name: Set up Python 3.7
-      uses: actions/setup-python@v1
+    - uses: actions/checkout@main
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v2
       with:
-        python-version: 3.7
+        python-version: 3.8
 
-    - name: Install package
+    - name: Install package 
       run: |
-          pip install build
+          pip install build poetry
 
     - name: Build source tarball
       run: |
           rm -rf dist;
-          python setup.py sdist
-
+          poetry build
+ 
     - name: Publish distribution to Test PyPI
-      uses: pypa/gh-action-pypi-publish@master
+      uses: pypa/gh-action-pypi-publish@release/v1
       with:
         user: __token__
         password: ${{ secrets.TEST_PYPI_API_TOKEN }}
         repository_url: https://test.pypi.org/legacy/
     - name: Publish distribution to PyPI
       if: startsWith(github.ref, 'refs/tags')
-      uses: pypa/gh-action-pypi-publish@master
+      uses: pypa/gh-action-pypi-publish@release/v1
       with:
         user: __token__
         password: ${{ secrets.PYPI_API_TOKEN }}