add more tools

sequana · Jan 16, 2024 · c606a45 · c606a45
1 parent fd24aee
commit c606a45
Showing 1 changed file with 24 additions and 0 deletions.
diff --git a/versionix/registry.py b/versionix/registry.py
@@ -121,6 +121,10 @@ def parser_split_2_strip_v(x):
         "options": "-v",
         "parser": lambda x: x.stderr.split("\n")[1].split()[1][1:], 
     },
+    "filter-abund.py": {
+        "options": "--version",
+        "parser": lambda x: [y.split()[1] for y in x.stderr.split("\n") if y.startswith("khmer")][0]
+    },
     "flye": {
         "options": "--version",
     },
@@ -159,6 +163,10 @@ def parser_split_2_strip_v(x):
         "options": "",
         "parser": lambda x: x.stdout.split("\n")[1].split()[2]
     },
+    "liftoff": {
+        "options": "--version",
+        "parser": parser_strip_v
+    },
     "macs3": {
         "options": "--version",
         "parser": parser_split_2,
@@ -174,6 +182,10 @@ def parser_split_2_strip_v(x):
         "options": "--version",
         "parser": parser_split_3
     },
+    "normalize-by-median.py": {
+        "options": "--version",
+        "parser": lambda x: [y.split()[1] for y in x.stderr.split("\n") if y.startswith("khmer")][0]   
+    },
     "pbindex": {
         "options": "--version",
         "parser": parser_split_2
@@ -206,6 +218,10 @@ def parser_split_2_strip_v(x):
         "options": "",
         "parser": lambda x: x.stderr.split("\n")[1].split()[1]
     },
+    "quast.py": {
+        "options": "",
+        "parser": lambda x: x.stderr.split("\n")[1].split()[1]
+    },
     "salmon": {
         "options": "--version",
         "parser": parser_split_2
@@ -244,6 +260,14 @@ def parser_split_2_strip_v(x):
     "singularity": {
         "options": "version"
     },
+    "spades.py": {
+        "options": "--version",
+        "parser": parser_split_2_strip_v
+    },
+    "split-paired-reads.py": {
+        "options": "--version",
+        "parser": lambda x: [y.split()[1] for y in x.stderr.split("\n") if y.startswith("khmer")][0]
+    },
     "STAR": {
         "options": "--version"
     },