MASTER code for "A CHROMOSOMAL CONNECTOME FOR PSYCHIATRIC AND METABOLIC RISK VARIANTS IN ADULT DOPAMINERGIC NEURONS " Espeso-Gil et al.2020
Given any GWAS risk loci (or other purpose loci, LOI=loci of interest) and genomic regions of interest (some chromosomes, segments, chrom3Dbeads, COI=cluster of interest) the utility produces a circos interactome coming from HiC-Pro results and reports also a transcription factor binding ranked list of the LOI+LOIconnectome.
- bedtools > 2.24.0
- circos
- homer > 4.10
A new version of the code will be available for run it in a automated way directly from HiC-Pro results.