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1. automat_chrom3D automat_chrom3D Public

   Preparation of gtrack diploid file to run chrom3D

   Shell 1

2. automat_chrom3D_colors automat_chrom3D_colors Public

   Utility to color beads in chrom3D

   Shell 1

3. automat_euclidean automat_euclidean Public

   Utility to calculate Euclidean distances in chrom3D models

   R 1

4. HiCpro_WashU HiCpro_WashU Public

   Transform HiC-Pro results to visual pair-wise interactions in WashU epigenome browser.

   R 5

5. SATB2_3D_Genome SATB2_3D_Genome Public

   Code used for Wahl et al.2024

   R 2