rewrite epiv2 exports #4862
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| name: ci-checks | |
| # run on all pull requests and on select branch pushes | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| - next | |
| jobs: | |
| backend: | |
| name: backend | |
| runs-on: ubuntu-22.04 | |
| services: | |
| postgres: | |
| image: postgres:12-alpine | |
| env: | |
| POSTGRES_USER: hawc | |
| POSTGRES_PASSWORD: password | |
| POSTGRES_DB: hawc | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| redis: | |
| image: redis:6-alpine | |
| options: --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5 | |
| ports: | |
| - 6379:6379 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.11' | |
| architecture: 'x64' | |
| - name: try to restore pip cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: install | |
| run: | | |
| mv tests/data/ci-webpack-stats.json hawc/webpack-stats.json | |
| pip install -U pip wheel | |
| pip install -r requirements/dev.txt | |
| - name: lint | |
| run: | | |
| make lint-py | |
| - name: Setup linux environment | |
| if: startsWith(runner.os, 'Linux') | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y make libgslcblas0 libgsl-dev | |
| export "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib" | |
| sudo cp vendor/libnlopt.so /usr/local/lib/libnlopt.so.0 | |
| sudo ln -s /lib/x86_64-linux-gnu/libgsl.so /usr/local/lib/libgsl.so.25 | |
| export SITE_PKG=`python -c "import sysconfig; print(sysconfig.get_path('purelib'))"` | |
| export "BMD_DLL=$SITE_PKG/bmds/bin/BMDS330/libDRBMD.so" | |
| echo $BMD_DLL | |
| ldd $BMD_DLL | |
| - name: test | |
| env: | |
| DJANGO_DB_NAME: hawc | |
| DJANGO_DB_USER: hawc | |
| DJANGO_DB_PW: password | |
| DJANGO_DB_HOST: localhost | |
| DJANGO_CACHE_LOCATION: redis://localhost:6379/0 | |
| PUBMED_API_KEY: ${{ secrets.PUBMED_API_KEY }} | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| export "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib" | |
| fi | |
| coverage run -m pytest --vcr-record=none | |
| coverage html -d coverage_report | |
| echo "# Python coverage report" >> $GITHUB_STEP_SUMMARY | |
| coverage report --format=markdown >> $GITHUB_STEP_SUMMARY | |
| - name: loc | |
| run: | | |
| sudo apt-get install -y cloc | |
| echo "# Lines of code report" >> $GITHUB_STEP_SUMMARY | |
| make loc >> $GITHUB_STEP_SUMMARY | |
| - name: upload-coverage-report | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-report | |
| path: coverage_report | |
| frontend: | |
| name: frontend | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-node@v3 | |
| with: | |
| node-version: '18.x' | |
| - name: Get yarn cache directory path | |
| id: yarn-cache-dir-path | |
| run: echo "::set-output name=dir::$(yarn cache dir)" | |
| - name: try to restore yarn cache | |
| uses: actions/cache@v3 | |
| id: yarn-cache | |
| with: | |
| path: ${{ steps.yarn-cache-dir-path.outputs.dir }} | |
| key: ${{ runner.os }}-yarn-${{ hashFiles('frontend/package.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-yarn- | |
| - name: install | |
| run: | | |
| yarn --cwd ./frontend install | |
| - name: lint | |
| run: | | |
| make lint-js | |
| - name: test | |
| run: | | |
| npm --prefix ./frontend run test | |
| - name: build for integration tests | |
| run: | | |
| npm --prefix ./frontend run build | |
| - name: Upload webpack build | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: webpack-build | |
| path: | | |
| hawc/webpack-stats.json | |
| hawc/static/bundles/ | |
| integration: | |
| name: integration | |
| needs: [backend, frontend] | |
| runs-on: ubuntu-22.04 | |
| services: | |
| postgres: | |
| image: postgres:12-alpine | |
| env: | |
| POSTGRES_USER: hawc | |
| POSTGRES_PASSWORD: password | |
| POSTGRES_DB: hawc | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| env: | |
| DJANGO_DB_HOST: localhost | |
| DJANGO_DB_NAME: hawc | |
| DJANGO_DB_PW: password | |
| DJANGO_DB_USER: hawc | |
| INTEGRATION_TESTS: 1 | |
| LIVESERVER_HOST: localhost | |
| LIVESERVER_PORT: 8000 | |
| PUBMED_API_KEY: ${{ secrets.PUBMED_API_KEY }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.11' | |
| architecture: 'x64' | |
| - name: try to restore pip cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Download webpack build | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: webpack-build | |
| path: hawc | |
| - name: install hawc | |
| run: | | |
| pip install -U pip | |
| pip install -r requirements/dev.txt | |
| playwright install --with-deps chromium | |
| # https://github.community/t/how-to-retry-a-failed-step-in-github-actions-workflow/125880 | |
| - name: run integration tests | |
| id: test | |
| continue-on-error: true | |
| run: | | |
| py.test -sv tests/integration/ | |
| - name: run integration tests (retry) | |
| if: steps.test.outcome=='failure' | |
| id: retry | |
| continue-on-error: true | |
| run: | | |
| py.test -sv --lf tests/integration/ | |
| - name: set status | |
| if: always() | |
| run: | | |
| if ${{ steps.test.outcome=='success' || steps.retry.outcome=='success' }}; then | |
| echo success! | |
| else | |
| exit 1 | |
| fi |