a little program
git clone https://github.com/sharkLoc/skrTools.git
cd skrTools && make
Program: skr
Usage: skr <command> [options]
fq2fa translate fastq file to fasta
fqstat summary statistics of fastq file
mergeVcf merge vcf files from list
statVcf summary statistics of vcf file
makewind make bed from a list file
Iterm reads_1.fq reads_2.fq
read average length: 150 150
read GC content(%): 48.42 48.48
total read Count: 34946389 34946389
total base Count: 5241958350 5241958350
base A Count: 1352284833(25.80%) 1342903044(25.62%)
base C Count: 1270459966(24.24%) 1246706604(23.78%)
base G Count: 1267522866(24.18%) 1294357728(24.69%)
base T Count: 1351401800(25.78%) 1357986115(25.91%)
base N Count: 288885(0.01%) 4859(0.00%)
Number of base calls with quality value of 20 or higher (Q20+) (%) 5113248711(97.54%) 5092440219(97.15%)
Number of base calls with quality value of 30 or higher (Q30+) (%) 4886887711(93.23%) 4832524601(92.19%)