ProteomicsTools

• 2015/11/23 Version 4.0.10
  1. Bugfix: MS3 Peptide Variants Interpreter 1.0.8, SingleAminoacidPolymorphism is saved with error format in fasta file

ProteomicsTools

• 2015/11/12 Version 4.0.9
  1. Enhanced: MS3 Library Builder/MS3 Peptide Variants Interpreter 1.0.7, restore excluding peptide file as optional parameter.

ProteomicsTools

• 2015/11/11 Version 4.0.8
  1. Enhanced: MS3 Library Builder/MS3 Peptide Variants Interpreter 1.0.6
  2. Enhanced: Add about page with homepage and email links.
• 2015/10/14 Version 4.0.7
  1. Enhanced: BuildSummary 7.1.8： support to group spectrum by protein tag for FDR estimation.

ProteomicsTools

1. Enhanced: Multiple Raw To MGF: add overwrite option.
2. Enhanced: Silac Quantification Summary Viewer 1.2.0: Filter protein and peptide by correlation seprately.
3. Enhanced: BuildSummary speed up and support target-decoy-spectrum searching strategy.

ProteomicsTools

• 2015/10/01 Version 4.0.5
  1. Bugfix: Mascot Generic Format File Precursor Shifting Precessor 1.2.0: add unnecessary (hydrogen mass * precursor charge) to the shift mass in previous version. Now fixed.

ProteomicsTools

• 2015/09/24 Version 4.0.4
  1. Enhanced: MS3 Library Builder/MS2 SAP Predictor 1.0.4: output library ms2 score, expect value and proteins.

ProteomicsTools

• 2015/09/22 Version 4.0.3
  1. Enhanced: MS3 Library Builder/MS2 SAP Predictor 1.0.3: consider modification at terminal loss, add options for max terminal loss and min terminal lossed sequence length.
• 2015/09/18 Version 4.0.2
  1. Enhanced: BuildSummary 7.1.7: filter single wonder by spectrum count for SimpleProtein/Peptide/UniquePeptide FDR mode, filter spectra with maximum miss cleavage sites (default 2).

ProteomicsTools

• 2015/09/17 Version 4.0.1
  1. Enhanced: MS3 Library Builder/MS2 SAP Predictor 1.0.2: allow C-terminal loss in prediction, output interval data.

ProteomicsTools

• 2015/09/15 Version 4.0.0
  1. Enhanced: MS3 SAP Predictor 1.0.1: allow N-terminal loss in prediction.

ProteomicsTools

• 2015/09/04 Version 3.9.9
  1. Enhanced: SILAC Quantification Summary Viewer 1.1.0: the R sqaure only worked when user click the "Update" button, then the result saved can be displayed properly.