ProteomicsTools

2015/08/24 Version 3.9.8

1. New feature: MS3 Library Builder / MS3 SAP Predictor : predict single aminoacid polymorphism using MS2/MS3 data.

ProteomicsTools

2015/08/06 Version 3.9.7

1. Enhanced: mzXML format file generated by TurboRaw2MGF now is compatible with TPP (without nested scans).

ProteomicsTools

2015/08/03 Version 3.9.6

1. Enhanced: mzXML format file generated by TurboRaw2MGF now is compatible with MaxQuant.

ProteomicsTools

Bugfix: SILAC Quantification Calculator: compatible with atom composition file containing line with tab characters only.

ProteomicsTools

• 2015/06/12 Version 3.9.4
  1. Enhanced: Turbo Mascot MGF Precursor Shift Processor: allow to input the shift mass.

ProteomicsTools

1. Enhanced: TurboRaw2MGF: allow to extract MS3 without any filtering while extract MS2 with filtering.
2. Enhanced: BuildSummary: export retention time for each peptide-spectrum-match

ProteomicTools

1. Enhanced: BuildSummary: the sequence with only I/L difference will be treated as identical sequence when calculating unique peptide count of protein.
2. Enhanced: BuildSummary: the protein groups without any distinct peptide will be removed.

ProteomicsTools

1. Bugfix: pNovo SAP validator: compatible with pNovo sequences with unknown amino acid.
2. Enhanced: Mascot SAP validator: throw exception when no mutation type information in protein name.

ProteomicsTools

• 2015/02/26 Version 3.9.0
  1. Enhanced: MaxQuant Evidence To Peptide Converter: remove the PSM from decoy and contaminant proteins.

ProteomicsTools

• 2015/02/16 Version 3.8.9
  1. Enhanced: BuildSummary: extract phosphorylation site probability from ProteomeDiscoverer MSF file.
  2. Enhanced: Isobaric Labelling Peptide Statistic Builder: Filter phosphorylation peptides by site probability.
  3. New: Aminoacid Insertion Builder