ProteomicsTools

Bugfix: Null reference exception of Mascot SAP Validator.

ProteomicsTools

2015/01/21 Version 3.8.7
Enhanced: BuildSummary: XTandem, Comet and MSGF+ supports using either Score or ExpectValue for false discovery rate filtering.
Bugfix: Isobaric Labeling Peptide Statistic Builder: R code error when there is missing value.
Bugfix: OMSSA parser: theoretical mass parsing error.

ProteomicsTools

2015/01/13 Version 3.8.6
Enhanced: Isobaric Labeling Peptide Statistic Builder: quantify peptides with/without modification.
Bugfix: OMSSA parser: trust charge information in title.

ProteomicsTools

2015/01/05 Version 3.8.5
Enhanced: MaxQuant Site To Peptide Converter 1.0.3: parsing of modification site based on msms.txt for SILAC data.

ProteomicsTools

2015/01/05 Version 3.8.4
New: Isobaric Labeling Experimental Design Builder: Setup experimental category information and refernce channels which will be used in quantification.
New: Isobaric Labeling Peptide Statistic Builder: Quantify peptides.
Enhanced: Isobaric Labeling Protein Statistic Builder: The protein intensity of sample channels in final resuult will be normalized by refernece channel.

ProteomicsTools

2014/12/30 Version 3.8.3
Bugfix: BuildSummary 7.1.2: Theoretical mass and experimental mass parsing error in MzIdent format, MSGF and MyriMatch will be affected.

ProteomicsTools

2014/12/30 Version 3.8.2
Bugfix: MaxQuant Site To Peptide Converter 1.0.2: parsing of modification site

ProteomicsTools

2014/12/29 Version 3.8.1
Enhanced: O18 Quantification Suite: filter outliers before linear regression.
Enhanced: SILAC Quantification Viewer: filter protein/peptide quantification result using R square. Only protein/peptide passed R square filter will be exported.

ProteomicsTools

2014/12/23 Version 3.8.0 (IMPORTANT)
Bugfix: Isobaric Labelling Protein Statistic Builder 1.2.2 : R code error for quantify protein using Sum method. If you used 1.2.0, you need to rerun the analysis.

ProteomicsTools

Bugfix: Isobaric Labelling Protein Statistic Builder 1.2.1 : R code error for quantify peptides. If you used 1.2.0, you need to rerun the analysis.