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SupportedGenomes
Li Shen edited this page Mar 30, 2015
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All genome files can be downloaded in this Google drive folder: ngs.plot genome folder
Please request new genomes in this post: request your genome files
We should be able to get them compiled in short time!
| ID | Assembly | Species | Ensembl Version |
|---|---|---|---|
| AGPv3 | AGPv3 | zea_mays | 21 |
| Asm852v1 | ASM852v1 | schizosaccharomyces_pombe | 21 |
| IRGSP-1 | IRGSP-1 | oryza_sativa | 21 |
| Tair10 | TAIR10 | arabidopsis_thaliana | 21 |
| Zv9 | Zv9 | danio_rerio | 75 |
| bosTau6 | UMD3.1 | bos_taurus | 75 |
| ce6 | WS220 | caenorhabditis_elegans | 66 |
| ceX | WBce1235 | caenorhabditis_elegans | 75 |
| dm3 | BDGP5 | drosophila_melanogaster | 75 |
| galGal4 | Galgal4 | gallus_gallus | 75 |
| hg18 | NCBI36 | homo_sapiens | 54 |
| hg19 | GRCh37 | homo_sapiens | 75 |
| mm10 | GRCm38 | mus_musculus | 75 |
| mm9 | NCBIM37 | mus_musculus | 67 |
| panTro4 | CHIMP2.1.4 | pan_troglodytes | 75 |
| rheMac2 | MMUL_1 | macaca_mulatta | 75 |
| rn4 | RGSC3.4 | rattus_norvegicus | 69 |
| rn5 | Rnor_5.0 | rattus_norvegicus | 75 |
| sacCer2 | EF3 | saccharomyces_cerevisiae | 63 |
| sacCer3 | EF4 | saccharomyces_cerevisiae | 74 |
| sulfAcid1 | GCA_000012285.1 | sulfolobus_acidocaldarius_dsm_639 | 21 |
We also generated some annotation databases not in Ensembl, because of special requests from our users:
| ID | Assembly | Species |
|---|---|---|
| AgamP38 | Anopheles-gambiae-PEST_BASEFEATURES | anopheles_gambiae |
| Gmax189 | Gmax189 | glycine_max |
| ITAG24 | ITAG2.4 | solanum_lycopersicum |
| SC5314A21 | SC5314A21 | candida_albicans |
| od1 | oikopleura_gene_models | oikopleura_dioica |