Skip to content

Commit

Permalink
update doc
Browse files Browse the repository at this point in the history
  • Loading branch information
shenwei356 committed Nov 20, 2023
1 parent e027292 commit 89d1e6c
Show file tree
Hide file tree
Showing 3 changed files with 7 additions and 5 deletions.
1 change: 1 addition & 0 deletions doc/bench
7 changes: 4 additions & 3 deletions doc/docs/chinese-dev.md
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,8 @@ TaxonKit为命令行工具,采用子命令的方式来执行不同功能,大

## 局限性

- 分类学数据库有很多,TaxonKit目前只支持应用最广泛的NCBI Taxonomy。
- 对于GTDB Taxonomy,可以通过现有工具,如[gtdb_to_taxdump](https://github.com/nick-youngblut/gtdb_to_taxdump)
将其数据转换为NCBI taxdump文件。
- <s>分类学数据库有很多,TaxonKit目前只支持应用最广泛的NCBI Taxonomy。</s>
可以用[create-taxdump](https://bioinf.shenwei.me/taxonkit/usage/#create-taxdump)命令把任意(gtdb, ictv,自定义)的分类学数据库转为NCBI taxdump格式 。
- <s>对于GTDB Taxonomy,可以通过现有工具,如[gtdb_to_taxdump](https://github.com/nick-youngblut/gtdb_to_taxdump)
将其数据转换为NCBI taxdump文件。</s>用taxonkit就好,https://github.com/shenwei356/gtdb-taxdump。

4 changes: 2 additions & 2 deletions doc/mkdocs.yml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
site_name: TaxonKit - NCBI Taxonomy Toolkit
site_url: https://bioinf.shenwei.me/taxonkit
pages:
nav:
- Home: index.md
- Download: download.md
- Usage: usage.md
Expand All @@ -24,7 +24,7 @@ theme:
extra:
manifest: manifest.webmanifest

arkdown_extensions:
markdown_extensions:
- admonition
- codehilite:
guess_lang: true
Expand Down

0 comments on commit 89d1e6c

Please sign in to comment.