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Taxon ID instead of names in lineage #3

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AsmaTahir opened this issue Apr 25, 2017 · 2 comments
Closed

Taxon ID instead of names in lineage #3

AsmaTahir opened this issue Apr 25, 2017 · 2 comments

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@AsmaTahir
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Hi there,

I would like to deduce the taxon ID#s instead of names in lineage. Is it possible? The documentation didn't describe it.

Thanks!
@shenwei356
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shenwei356 commented Apr 25, 2017 •
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I've added it as the third column in the output of taxonkit lineage.

Check v0.1.8-dev or later versions.

Example:

349741  cellular organisms;Bacteria;PVC group;Verrucomicrobia;Verrucomicrobiae;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia muciniphila;Akkermansia muciniphila ATCC BAA-835  131567;2;1783257;74201;203494;48461;1647988;239934;239935;349741

@AsmaTahir
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Great. Thanks!

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@shenwei356 @AsmaTahir