kaibc_binding

A reaction model of the KaiB-KaiC complex formation with some scripts for creating figures.

Contents

runAll.sh

Script excuting the following scripts, which conduct numerical calculation and create figures.

installPaijmans.sh

runPaijmans.sh

figPaijmans.py

Scripts concerning the model by Paijmans et al. PLOS Comput. Biol. 13, e1005415 (2017). doi: 10.1371/journal.pcbi.1005415

model1_5.py

model6.py

Scripts concerning the present models.

bbind_exp.csv

Experimantal data from Kawamoto et al. Nature Communications, 11, 2242 (2020). doi: 10.1038/s41467-020-16087-x

Requirements

We excute this script with the packages below.

• python 3.8.5
• matplotlib 3.3.2
• numpy 1.19.2
• scipy 1.5.2
• emcee 3.0.2
• pandas 1.1.3

Usage

source ./runAll.sh