@sifrproject

sifrproject

Semantic Indexing of French Biomedical Data Resources (SIFR) project. Research project funded by ANR, Univ. of Montpellier, CNRS and IBC

  • A rails application for biological ontologies, (originally from http://bioportal.bioontology.org). But reused in two project at LIRMM.

    Ruby 4 5 Updated Jun 14, 2018
  • A Docker compose to have a fully working BioPortal development environment

    XSLT 3 Updated Apr 13, 2018
  • Metadata for Ontology Description and Publication Ontology

    2 2 CC-BY-4.0 Updated Apr 6, 2018
  • Models and serializers for ontologies and related artifacts backed by 4store

    Web Ontology Language 3 Updated Apr 3, 2018
  • Web service to add functionalities to the http://bioportal.bioontology.org and similar ontology annotators

    Java 3 1 Updated Mar 26, 2018
  • SKOS version of CLADIMED

    Java 1 issue needs help Updated Feb 14, 2018
  • To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.

    Web Ontology Language 1 4 Updated Feb 8, 2018
  • Biotex applciation (automatic extraction of biomedical terms) - http://tubo.lirmm.fr/biotex/

    Java 3 Updated Dec 8, 2017
  • Workflow to use Unitex with the SIFR Annotator

    C++ Updated Dec 1, 2017
  • A Ruby client for accessing NCBO's hypermedia api

    Ruby 1 Updated Oct 2, 2017
  • Shell Updated Jul 27, 2017
  • Java Scripts to process Ontologies using OWLAPI for the SIFR project

    Java Updated Jul 17, 2017
  • Hypermedia API for NCBO's ontology-related projects

    Web Ontology Language 1 4 Updated Jul 1, 2017
  • Jobs that run on a regular basis in the NCBO infrastructure

    Web Ontology Language 3 Updated Jul 1, 2017
  • goo

    Forked from ncbo/goo

    Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.

    Ruby 1 Updated Jul 1, 2017
  • A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

    Web Ontology Language 4 Updated May 8, 2017
  • Java Updated Apr 6, 2017
  • These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

    Python 1 17 Updated Apr 5, 2017
  • Web Ontology Language 1 Updated Feb 10, 2017
  • Misc experimentations of the Viewpoints project.

    Updated Dec 14, 2016
  • MOD Metadata Vocabulary for describing and publishing ontologies.

    1 Updated Oct 18, 2016
  • A simple servlet to resolve purl.lirmm.fr URIs

    Java 1 Updated Oct 4, 2016
  • Ruby scripts to import ontologies from BioPortal or cropontology.org to a BioPortal Appliance

    Ruby Updated Jul 3, 2015
  • Dictionnary/lexicon creation from a BioPortal ontology repository

    Java Updated Jun 1, 2015
  • Project of Pierre and Olivier for semantic distance web application.

    PHP 1 MIT Updated Apr 6, 2015
  • This is the Kernel module of the ViewpointS API, an awesome java Subjective Knowledge Representation API based one the ViewpointS formalism

    Java 2 GPL-2.0 Updated Mar 11, 2015
  • Java (Servlet/JSP) interface of the BioTex application

    XML 2 Updated Feb 18, 2015
  • Soumia Melzi's project. Contains enhancement of the NCBO Annotator. Cf SWAT4LS 2014 papers

    Java Updated Feb 18, 2015
  • Viewpoints Web Application

    XML Updated Feb 16, 2015
  • This is the ViewpointS import/export module. It index web data, it allow to exchange viewpoints data in xml format, it manage the persistence thanks to Neo4J.

    Java 1 GPL-2.0 Updated Feb 9, 2015