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A rails application for biological ontologies, (originally from http://bioportal.bioontology.org). But reused in two project at LIRMM.
A Docker compose to have a fully working BioPortal development environment
Metadata for Ontology Description and Publication Ontology
Models and serializers for ontologies and related artifacts backed by 4store
Web service to add functionalities to the http://bioportal.bioontology.org and similar ontology annotators
SKOS version of CLADIMED
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
Biotex applciation (automatic extraction of biomedical terms) - http://tubo.lirmm.fr/biotex/
Workflow to use Unitex with the SIFR Annotator
A Ruby client for accessing NCBO's hypermedia api
Java Scripts to process Ontologies using OWLAPI for the SIFR project
Hypermedia API for NCBO's ontology-related projects
Jobs that run on a regular basis in the NCBO infrastructure
Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
Misc experimentations of the Viewpoints project.
MOD Metadata Vocabulary for describing and publishing ontologies.
A simple servlet to resolve purl.lirmm.fr URIs
Ruby scripts to import ontologies from BioPortal or cropontology.org to a BioPortal Appliance
Dictionnary/lexicon creation from a BioPortal ontology repository
Project of Pierre and Olivier for semantic distance web application.
This is the Kernel module of the ViewpointS API, an awesome java Subjective Knowledge Representation API based one the ViewpointS formalism
Java (Servlet/JSP) interface of the BioTex application
Soumia Melzi's project. Contains enhancement of the NCBO Annotator. Cf SWAT4LS 2014 papers
Viewpoints Web Application
This is the ViewpointS import/export module. It index web data, it allow to exchange viewpoints data in xml format, it manage the persistence thanks to Neo4J.