[Backport release-1.7] [r] Fix Seurat ingestion with missing command logs collection

[johnkerl]

Backport #2154 to the release-1.7 branch.

I don't know why the backport bot silently did nothing here.

[codecov]

Codecov Report

Merging #2155 (6fe4757) into release-1.7 (6c84b59) will decrease coverage by 3.82%.
Report is 2 commits behind head on release-1.7.
The diff coverage is 100.00%.

Additional details and impacted files

@@               Coverage Diff               @@
##           release-1.7    #2155      +/-   ##
===============================================
- Coverage        78.49%   74.68%   -3.82%     
===============================================
  Files              136       52      -84     
  Lines            10802     4345    -6457     
  Branches           209        0     -209     
===============================================
- Hits              8479     3245    -5234     
+ Misses            2223     1100    -1123     
+ Partials           100        0     -100     

Flag	Coverage Δ
libtiledbsoma	?
python	?
r	74.68% <100.00%> (+0.05%)	⬆️

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Components	Coverage Δ
python_api	∅ <ø> (∅)
libtiledbsoma	∅ <ø> (∅)