Merge pull request #143 from singularitti:cleanuo #288
singularittiAnnotations
43 errors and 10 warnings
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Documentation:
src/core.jl#L33
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/core.jl:33-87
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = Lattice([
4 0 0
0 4 0
0 0 3
]);
julia> positions = [
[0.0, 0.0, 0.0],
[0.5, 0.5, 0.5],
[0.3, 0.3, 0.0],
[0.7, 0.7, 0.0],
[0.2, 0.8, 0.5],
[0.8, 0.2, 0.5],
];
julia> atoms = [14, 14, 8, 8, 8, 8];
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = [
4.0 0.0 0.0
0.0 4.0 0.0
0.0 0.0 4.0
];
julia> positions = [[0.0, 0.0, 0.0], [0.5, 0.5, 0.5]];
julia> atoms = [1, 1];
julia> magmoms = [1.0, 1.0];
julia> cell = SpglibCell(lattice, positions, atoms, magmoms);
```
Subexpression:
lattice = Lattice([
Evaluated output:
ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
diff =
Warning: Diff output requires color.
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/core.jl#L33
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/core.jl:33-87
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = Lattice([
4 0 0
0 4 0
0 0 3
]);
julia> positions = [
[0.0, 0.0, 0.0],
[0.5, 0.5, 0.5],
[0.3, 0.3, 0.0],
[0.7, 0.7, 0.0],
[0.2, 0.8, 0.5],
[0.8, 0.2, 0.5],
];
julia> atoms = [14, 14, 8, 8, 8, 8];
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = [
4.0 0.0 0.0
0.0 4.0 0.0
0.0 0.0 4.0
];
julia> positions = [[0.0, 0.0, 0.0], [0.5, 0.5, 0.5]];
julia> atoms = [1, 1];
julia> magmoms = [1.0, 1.0];
julia> cell = SpglibCell(lattice, positions, atoms, magmoms);
```
Subexpression:
positions = [
Evaluated output:
ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
diff =
Warning: Diff output requires color.
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/core.jl#L33
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/core.jl:33-87
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = Lattice([
4 0 0
0 4 0
0 0 3
]);
julia> positions = [
[0.0, 0.0, 0.0],
[0.5, 0.5, 0.5],
[0.3, 0.3, 0.0],
[0.7, 0.7, 0.0],
[0.2, 0.8, 0.5],
[0.8, 0.2, 0.5],
];
julia> atoms = [14, 14, 8, 8, 8, 8];
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = [
4.0 0.0 0.0
0.0 4.0 0.0
0.0 0.0 4.0
];
julia> positions = [[0.0, 0.0, 0.0], [0.5, 0.5, 0.5]];
julia> atoms = [1, 1];
julia> magmoms = [1.0, 1.0];
julia> cell = SpglibCell(lattice, positions, atoms, magmoms);
```
Subexpression:
atoms = fill(35, length(positions));
Evaluated output:
ERROR: UndefVarError: `positions` not defined
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
diff =
Warning: Diff output requires color.
ERROR: UndefVarError: `positions` not defined
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/core.jl#L33
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/core.jl:33-87
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = Lattice([
4 0 0
0 4 0
0 0 3
]);
julia> positions = [
[0.0, 0.0, 0.0],
[0.5, 0.5, 0.5],
[0.3, 0.3, 0.0],
[0.7, 0.7, 0.0],
[0.2, 0.8, 0.5],
[0.8, 0.2, 0.5],
];
julia> atoms = [14, 14, 8, 8, 8, 8];
julia> cell = SpglibCell(lattice, positions, atoms);
julia> lattice = [
4.0 0.0 0.0
0.0 4.0 0.0
0.0 0.0 4.0
];
julia> positions = [[0.0, 0.0, 0.0], [0.5, 0.5, 0.5]];
julia> atoms = [1, 1];
julia> magmoms = [1.0, 1.0];
julia> cell = SpglibCell(lattice, positions, atoms, magmoms);
```
Subexpression:
cell = SpglibCell(lattice, positions, atoms);
Evaluated output:
ERROR: UndefVarError: `lattice` not defined
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
diff =
Warning: Diff output requires color.
ERROR: UndefVarError: `lattice` not defined
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/symmetry.jl#L312
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/symmetry.jl:312-318
```jldoctest
julia> lattice = Lattice([
1 0 0
0 1 0
0 0 1
]);
```
Subexpression:
lattice = Lattice([
Evaluated output:
ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
1 0 0
0 1 0
0 0 1
]);
diff =
Warning: Diff output requires color.
1 0 0
0 1 0
0 0 1
]);ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/symmetry.jl#L53
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/symmetry.jl:53-78
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> rotations, translations = get_symmetry(cell);
julia> size(rotations) == size(translations) == (16,)
```
Subexpression:
lattice = Lattice([
Evaluated output:
ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
diff =
Warning: Diff output requires color.
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/symmetry.jl#L53
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/symmetry.jl:53-78
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> rotations, translations = get_symmetry(cell);
julia> size(rotations) == size(translations) == (16,)
```
Subexpression:
positions = [
Evaluated output:
ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
diff =
Warning: Diff output requires color.
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];ERROR: syntax: incomplete: premature end of input
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/symmetry.jl#L53
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/symmetry.jl:53-78
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> rotations, translations = get_symmetry(cell);
julia> size(rotations) == size(translations) == (16,)
```
Subexpression:
atoms = fill(35, length(positions));
Evaluated output:
ERROR: UndefVarError: `positions` not defined
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
diff =
Warning: Diff output requires color.
ERROR: UndefVarError: `positions` not defined
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/symmetry.jl#L53
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/symmetry.jl:53-78
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> rotations, translations = get_symmetry(cell);
julia> size(rotations) == size(translations) == (16,)
```
Subexpression:
cell = SpglibCell(lattice, positions, atoms);
Evaluated output:
ERROR: UndefVarError: `lattice` not defined
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
diff =
Warning: Diff output requires color.
ERROR: UndefVarError: `lattice` not defined
Stacktrace:
[1] top-level scope
@ none:1
|
|
Documentation:
src/symmetry.jl#L53
doctest failure in ~/work/Spglib.jl/Spglib.jl/src/symmetry.jl:53-78
```jldoctest
julia> lattice = Lattice([
[5.0759761474456697, 5.0759761474456697, 0],
[-2.8280307701821314, 2.8280307701821314, 0],
[0, 0, 8.57154746],
]);
julia> positions = [
[0.0, 0.84688439, 0.1203133],
[0.0, 0.65311561, 0.6203133],
[0.0, 0.34688439, 0.3796867],
[0.0, 0.15311561, 0.8796867],
[0.5, 0.34688439, 0.1203133],
[0.5, 0.15311561, 0.6203133],
[0.5, 0.84688439, 0.3796867],
[0.5, 0.65311561, 0.8796867],
];
julia> atoms = fill(35, length(positions));
julia> cell = SpglibCell(lattice, positions, atoms);
julia> rotations, translations = get_symmetry(cell);
julia> size(rotations) == size(translations) == (16,)
```
Subexpression:
rotations, translations = get_symmetry(cell);
Evaluated output:
ERROR: UndefVarError: `cell` not defined
Stacktrace:
[1] top-level scope
@ none:1
Expected output:
diff =
Warning: Diff output requires color.
ERROR: UndefVarError: `cell` not defined
Stacktrace:
[1] top-level scope
@ none:1
|
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Documentation
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
no docs found for 'get_stabilized_reciprocal_mesh' in `@docs` block in src/lib/public.md:31-53
```@docs
basis_vectors
natoms
atomtypes
get_symmetry
get_symmetry_from_database
get_dataset
get_dataset_with_hall_number
get_multiplicity
get_international
get_schoenflies
get_spacegroup_type
get_spacegroup_type_from_symmetry
get_hall_number_from_symmetry
standardize_cell
find_primitive
refine_cell
niggli_reduce
delaunay_reduce
get_ir_reciprocal_mesh
get_stabilized_reciprocal_mesh
get_version
```
|
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
reference for 'Transformation-matrix-and-origin-shift' could not be found in src/lib/public.md.
|
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
reference for 'Transformation-matrix-and-origin-shift' could not be found in src/lib/public.md.
|
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
reference for 'Wyckoff-positions-and-symmetrically-equivalent-atoms' could not be found in src/lib/public.md.
|
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
reference for 'Standardized-crystal-structure-after-idealization' could not be found in src/lib/public.md.
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
no doc found for reference '[`get_symmetry_with_collinear_spin`](@ref)' in src/lib/public.md.
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
no doc found for reference '[`spg_get_dataset`](@ref)' in src/lib/public.md.
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
4 docstrings not included in the manual:
CrystallographyCore.basisvectors :: Tuple{Lattice}
CrystallographyCore.eachatom :: Tuple{CrystallographyCore.Cell}
CrystallographyCore.Cell
CrystallographyCore.AbstractLattice
These are docstrings in the checked modules (configured with the modules keyword)
that are not included in @docs or @autodocs blocks.
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Writers/HTMLWriter.jl#L2081
invalid local link: unresolved path in lib/public.md
link.text =
1-element Vector{Any}:
"Transformation matrix and origin shift"
link.url = "@ref"
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Documentation:
../../../.julia/packages/Documenter/bYYzK/src/Writers/HTMLWriter.jl#L2081
invalid local link: unresolved path in lib/public.md
link.text =
1-element Vector{Any}:
"Transformation matrix and origin shift"
link.url = "@ref"
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