-
Notifications
You must be signed in to change notification settings - Fork 4
/
pg29mt-scaffolds.manual.gff
345 lines (345 loc) · 23.1 KB
/
pg29mt-scaffolds.manual.gff
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
##gff-version 3
##sequence-region LKAM01000001.1 1 1238593
##sequence-region LKAM01000002.1 1 676873
##sequence-region LKAM01000003.1 1 369480
##sequence-region LKAM01000005.1 1 308816
##sequence-region LKAM01000006.1 1 591782
##sequence-region LKAM01000007.1 1 474387
##sequence-region LKAM01000008.1 1 284015
##sequence-region LKAM01000009.1 1 183372
##sequence-region LKAM01000010.1 1 150036
##sequence-region LKAM01000011.1 1 237718
##sequence-region LKAM01000012.1 1 131948
##sequence-region LKAM01000016.1 1 107813
LKAM01000001.1 manual gene 279747 280064 . - . ID=gene1;Name=cox2
LKAM01000001.1 manual mRNA 279747 280064 . - . ID=mRNA1;Parent=gene1;Name=cox2-e2;part=2/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33533.1
LKAM01000001.1 manual exon 279747 280064 . - . Parent=mRNA1
LKAM01000001.1 manual CDS 279747 280064 . - 2 Parent=mRNA1
###
LKAM01000001.1 manual gene 308997 309383 . + . ID=gene2;Name=nad1
LKAM01000001.1 manual mRNA 308997 309383 . + . ID=mRNA2;Parent=gene2;Name=nad1-e1;part=1/4;exception=trans-splicing,RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33537.1
LKAM01000001.1 manual exon 308997 309383 . + . Parent=mRNA2
LKAM01000001.1 manual CDS 308997 309383 . + 0 Parent=mRNA2
###
LKAM01000001.1 manual gene 361267 361325 . - . ID=gene3;Name=nad1
LKAM01000001.1 manual mRNA 361267 361325 . - . ID=mRNA3;Parent=gene3;Name=nad1-e4;part=3/4;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33537.1
LKAM01000001.1 manual exon 361267 361325 . - . Parent=mRNA3
LKAM01000001.1 manual CDS 361267 361325 . - 0 Parent=mRNA3
###
LKAM01000001.1 manual gene 369818 376437 . - . ID=gene4;Name=nad4
LKAM01000001.1 manual mRNA 369818 376437 . - . ID=mRNA4;Parent=gene4;Name=nad4-e234;part=2/2;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33540.1
LKAM01000001.1 manual exon 369818 369996 . - . Parent=mRNA4
LKAM01000001.1 manual CDS 369818 369996 . - 2 Parent=mRNA4
LKAM01000001.1 manual intron 369997 372424 . - . Parent=mRNA4;Name=nad4-i2
LKAM01000001.1 manual exon 372425 372847 . - . Parent=mRNA4
LKAM01000001.1 manual CDS 372425 372847 . - 2 Parent=mRNA4
LKAM01000001.1 manual intron 372848 375922 . - . Parent=mRNA4;Name=nad4-i3
LKAM01000001.1 manual exon 375923 376437 . - . Parent=mRNA4
LKAM01000001.1 manual CDS 375923 376437 . - 1 Parent=mRNA4
###
LKAM01000001.1 manual gene 404065 404679 . + . ID=gene5;Name=nad6
LKAM01000001.1 manual mRNA 404065 404679 . + . ID=mRNA5;Parent=gene5;Name=nad6;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33543.1
LKAM01000001.1 manual exon 404065 404679 . + . Parent=mRNA5
LKAM01000001.1 manual CDS 404065 404679 . + 0 Parent=mRNA5
###
LKAM01000001.1 manual gene 429170 429667 . - . ID=gene6;Name=nad4L
LKAM01000001.1 manual mRNA 429170 429667 . - . ID=mRNA6;Parent=gene6;Name=nad4L;inference=similar to AA sequence:INSD:AJP33540.1
LKAM01000001.1 manual exon 429170 429667 . - . Parent=mRNA6
LKAM01000001.1 manual CDS 429170 429667 . - 0 Parent=mRNA6
###
LKAM01000001.1 manual gene 452590 453177 . + . ID=gene7;Name=rps7
LKAM01000001.1 manual mRNA 452590 453177 . + . ID=mRNA7;Parent=gene7;Name=rps7;inference=similar to AA sequence:INSD:AJP33559.1
LKAM01000001.1 manual exon 452590 453177 . + . Parent=mRNA7
LKAM01000001.1 manual CDS 452590 453177 . + 0 Parent=mRNA7
###
LKAM01000001.1 manual gene 878603 878864 . - . ID=gene8;Name=nad1
LKAM01000001.1 manual mRNA 878603 878864 . - . ID=mRNA8;Parent=gene8;Name=nad1-e5;part=4/4;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33537.1
LKAM01000001.1 manual exon 878603 878864 . - . Parent=mRNA8
LKAM01000001.1 manual CDS 878603 878864 . - 1 Parent=mRNA8
###
LKAM01000001.1 manual gene 879180 881372 . - . ID=gene9;Name=matR
LKAM01000001.1 manual mRNA 879180 881372 . - . ID=mRNA9;Parent=gene9;Name=matR;note=putative alternative GGG start codon;inference=similar to AA sequence:INSD:AJP33535.1
LKAM01000001.1 manual exon 879180 881372 . - . Parent=mRNA9
LKAM01000001.1 manual CDS 879180 881372 . - 0 Parent=mRNA9
###
LKAM01000001.1 manual gene 883353 883869 . - . ID=gene10;Name=trnV-UAC;product=tRNA-Tyr
LKAM01000001.1 manual tRNA 883353 883869 . - . ID=tRNA1;Parent=gene10;Name=trnV-UAC;product=tRNA-Tyr;note=similar to DNA sequence:RefSeq:NC_010303.1:GeneID:5867575:locus_tag:CyTaMpt24
LKAM01000001.1 manual exon 883353 883387 . - . Parent=tRNA1
LKAM01000001.1 manual intron 883388 883830 . - . Parent=tRNA1;Name=trnV-UAC-i1
LKAM01000001.1 manual exon 883831 883869 . - . Parent=tRNA1
###
LKAM01000001.1 manual gene 889877 890296 . + . ID=gene11;Name=rps13
LKAM01000001.1 manual mRNA 889877 890296 . + . ID=mRNA10;Parent=gene11;Name=rps13;inference=similar to AA sequence:INSD:AJP33553.1
LKAM01000001.1 manual exon 889877 890296 . + . Parent=mRNA10
LKAM01000001.1 manual CDS 889877 890296 . + 0 Parent=mRNA10
###
LKAM01000002.1 manual gene 149783 150295 . - . ID=gene12;Name=rps11
LKAM01000002.1 manual mRNA 149783 150295 . - . ID=mRNA11;Parent=gene12;Name=rps11;inference=similar to AA sequence:INSD:AJP33551.1
LKAM01000002.1 manual exon 149783 150295 . - . Parent=mRNA11
LKAM01000002.1 manual CDS 149783 150295 . - 0 Parent=mRNA11
###
LKAM01000002.1 manual gene 259013 259495 . - . ID=gene13;Name=atp8
LKAM01000002.1 manual mRNA 259013 259495 . - . ID=mRNA12;Parent=gene13;Name=atp8;inference=similar to AA sequence:RefSeq:YP_009531511.1
LKAM01000002.1 manual exon 259013 259495 . - . Parent=mRNA12
LKAM01000002.1 manual CDS 259013 259495 . - 0 Parent=mRNA12
###
LKAM01000002.1 manual gene 272398 273993 . + . ID=gene14;Name=cox1
LKAM01000002.1 manual mRNA 272398 273993 . + . ID=mRNA13;Parent=gene14;Name=cox1;inference=similar to AA sequence:RefSeq:YP_009531494.1
LKAM01000002.1 manual exon 272398 273993 . + . Parent=mRNA13
LKAM01000002.1 manual CDS 272398 273993 . + 0 Parent=mRNA13
###
LKAM01000002.1 manual gene 354857 358121 . + . ID=gene15;Name=nad1
LKAM01000002.1 manual mRNA 354857 358121 . + . ID=mRNA14;Parent=gene15;Name=nad1-e23;part=2/4;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33537.1
LKAM01000002.1 manual exon 354857 354937 . + . Parent=mRNA14
LKAM01000002.1 manual CDS 354857 354937 . + 0 Parent=mRNA14
LKAM01000002.1 manual intron 354938 357929 . + . Parent=mRNA14;Name=nad1-i2
LKAM01000002.1 manual exon 357930 358121 . + . Parent=mRNA14
LKAM01000002.1 manual CDS 357930 358121 . + 0 Parent=mRNA14
###
LKAM01000002.1 manual gene 430540 432706 . - . ID=gene16;Name=nad2
LKAM01000002.1 manual mRNA 430540 432706 . - . ID=mRNA15;Parent=gene16;Name=nad2-e34;part=2/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33538.1
LKAM01000002.1 manual exon 430540 431112 . - . Parent=mRNA15
LKAM01000002.1 manual CDS 430540 431112 . - 2 Parent=mRNA15
LKAM01000002.1 manual intron 431113 432541 . - . Parent=mRNA15;Name=nad2-i3
LKAM01000002.1 manual exon 432542 432706 . - . Parent=mRNA15
LKAM01000002.1 manual CDS 432542 432706 . - 2 Parent=mRNA15
###
LKAM01000002.1 manual gene 434352 434742 . - . ID=gene17;Name=cox2
LKAM01000002.1 manual mRNA 434352 434742 . - . ID=mRNA16;Parent=gene17;Name=cox2-e1;part=1/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33533.1
LKAM01000002.1 manual exon 434352 434742 . - . Parent=mRNA16
LKAM01000002.1 manual CDS 434352 434742 . - 0 Parent=mRNA16
###
LKAM01000002.1 manual gene 443857 444366 . - . ID=gene18;Name=sdh3
LKAM01000002.1 manual mRNA 443857 444366 . - . ID=mRNA17;Parent=gene18;Name=sdh3;inference=similar to AA sequence:INSD:AJP33560.1
LKAM01000002.1 manual exon 443857 444366 . - . Parent=mRNA17
LKAM01000002.1 manual CDS 443857 444366 . - 0 Parent=mRNA17
###
LKAM01000002.1 manual gene 520109 520194 . + . ID=gene19;Name=cox2
LKAM01000002.1 manual mRNA 520109 520194 . + . ID=mRNA18;Parent=gene19;Name=cox2-e3;part=3/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33533.1
LKAM01000002.1 manual exon 520109 520194 . + . Parent=mRNA18
LKAM01000002.1 manual CDS 520109 520194 . + 2 Parent=mRNA18
###
LKAM01000002.1 manual gene 520530 521168 . + . ID=gene20;Name=atp4
LKAM01000002.1 manual mRNA 520530 521168 . + . ID=mRNA19;Parent=gene20;Name=atp4;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33523.1
LKAM01000002.1 manual exon 520530 521168 . + . Parent=mRNA19
LKAM01000002.1 manual CDS 520530 521168 . + 0 Parent=mRNA19
###
LKAM01000002.1 manual gene 535335 536021 . + . ID=gene21;Name=rps1
LKAM01000002.1 manual mRNA 535335 536021 . + . ID=mRNA20;Parent=gene21;Name=rps1;inference=similar to AA sequence:INSD:AJP33555.1
LKAM01000002.1 manual exon 535335 536021 . + . Parent=mRNA20
LKAM01000002.1 manual CDS 535335 536021 . + 0 Parent=mRNA20
###
LKAM01000002.1 manual gene 579435 580157 . - . ID=gene22;Name=rpl2
LKAM01000002.1 manual mRNA 579435 580157 . - . ID=mRNA21;Parent=gene22;Name=rpl2-e1;part=1/2;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33548.1
LKAM01000002.1 manual exon 579435 580157 . - . Parent=mRNA21
LKAM01000002.1 manual CDS 579435 580157 . - 0 Parent=mRNA21
###
LKAM01000002.1 manual gene 636821 637540 . - . ID=gene23;Name=rps2
LKAM01000002.1 manual mRNA 636821 637540 . - . ID=mRNA22;Parent=gene23;Name=rps2;inference=similar to AA sequence:RefSeq:YP_009531498.1
LKAM01000002.1 manual exon 636821 637540 . - . Parent=mRNA22
LKAM01000002.1 manual CDS 636821 637540 . - 0 Parent=mRNA22
###
LKAM01000002.1 manual gene 641636 642226 . + . ID=gene24;Name=nad9
LKAM01000002.1 manual mRNA 641636 642226 . + . ID=mRNA23;Parent=gene24;Name=nad9;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33545.1
LKAM01000002.1 manual exon 641636 642226 . + . Parent=mRNA23
LKAM01000002.1 manual CDS 641636 642226 . + 0 Parent=mRNA23
###
LKAM01000003.1 manual gene 121114 121773 . + . ID=gene25;Name=ccmB
LKAM01000003.1 manual mRNA 121114 121773 . + . ID=mRNA24;Parent=gene25;Name=ccmB;inference=similar to AA sequence:INSD:AJP33527.1
LKAM01000003.1 manual exon 121114 121773 . + . Parent=mRNA24
LKAM01000003.1 manual CDS 121114 121773 . + 0 Parent=mRNA24
###
LKAM01000003.1 manual gene 255503 256252 . - . ID=gene26;Name=mttB
LKAM01000003.1 manual mRNA 255503 256252 . - . ID=mRNA25;Parent=gene26;Name=mttB;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33536.1
LKAM01000003.1 manual exon 255503 256252 . - . Parent=mRNA25
LKAM01000003.1 manual CDS 255503 256252 . - 0 Parent=mRNA25
###
LKAM01000003.1 manual gene 277401 279164 . + . ID=gene27;Name=ccmFN
LKAM01000003.1 manual mRNA 277401 279164 . + . ID=mRNA26;Parent=gene27;Name=ccmFN;inference=similar to AA sequence:INSD:AJP33530.1
LKAM01000003.1 manual exon 277401 279164 . + . Parent=mRNA26
LKAM01000003.1 manual CDS 277401 279164 . + 0 Parent=mRNA26
###
LKAM01000003.1 manual gene 342272 342520 . + . ID=gene28;Name=atp9
LKAM01000003.1 manual mRNA 342272 342520 . + . ID=mRNA27;Parent=gene28;Name=atp9;inference=similar to AA sequence:INSD:AJP33526.1
LKAM01000003.1 manual exon 342272 342520 . + . Parent=mRNA27
LKAM01000003.1 manual CDS 342272 342520 . + 0 Parent=mRNA27
###
LKAM01000005.1 manual gene 13228 14751 . - . ID=gene29;Name=atp1
LKAM01000005.1 manual mRNA 13228 14751 . - . ID=mRNA28;Parent=gene29;Name=atp1;inference=similar to AA sequence:INSD:AJP33522.1
LKAM01000005.1 manual exon 13228 14751 . - . Parent=mRNA28
LKAM01000005.1 manual CDS 13228 14751 . - 0 Parent=mRNA28
###
LKAM01000005.1 manual gene 15527 16066 . - . ID=gene30;Name=rps12
LKAM01000005.1 manual mRNA 15527 16066 . - . ID=mRNA29;Parent=gene30;Name=rps12;inference=similar to AA sequence:INSD:AJP33552.1
LKAM01000005.1 manual exon 15527 16066 . - . Parent=mRNA29
LKAM01000005.1 manual CDS 15527 16066 . - 0 Parent=mRNA29
###
LKAM01000005.1 manual gene 16114 16470 . - . ID=gene31;Name=nad3
LKAM01000005.1 manual mRNA 16114 16470 . - . ID=mRNA30;Parent=gene31;Name=nad3;inference=similar to AA sequence:INSD:AJP33539.1
LKAM01000005.1 manual exon 16114 16470 . - . Parent=mRNA30
LKAM01000005.1 manual CDS 16114 16470 . - 0 Parent=mRNA30
###
LKAM01000005.1 manual gene 17378 17791 . - . ID=gene32;Name=rpl16
LKAM01000005.1 manual mRNA 17378 17791 . - . ID=mRNA31;Parent=gene32;Name=rpl16;note=putative alternative GUG start codon;inference=similar to AA sequence:INSD:AJP33547.1
LKAM01000005.1 manual exon 17378 17791 . - . Parent=mRNA31
LKAM01000005.1 manual CDS 17378 17791 . - 0 Parent=mRNA31
###
LKAM01000005.1 manual gene 17809 24144 . - . ID=gene33;Name=rps3
LKAM01000005.1 manual mRNA 17809 24144 . - . ID=mRNA32;Parent=gene33;Name=rps3;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33557.1
LKAM01000005.1 manual exon 17809 19215 . - . Parent=mRNA32
LKAM01000005.1 manual CDS 17809 19215 . - 0 Parent=mRNA32
LKAM01000005.1 manual intron 19216 21806 . - . Parent=mRNA32;Name=rps3-i1
LKAM01000005.1 manual exon 21807 21999 . - . Parent=mRNA32
LKAM01000005.1 manual CDS 21807 21999 . - 1 Parent=mRNA32
LKAM01000005.1 manual intron 22000 24070 . - . Parent=mRNA32;Name=rps3-i2
LKAM01000005.1 manual exon 24071 24144 . - . Parent=mRNA32
LKAM01000005.1 manual CDS 24071 24144 . - 0 Parent=mRNA32
###
LKAM01000005.1 manual gene 24148 24429 . - . ID=gene34;Name=rps19
LKAM01000005.1 manual mRNA 24148 24429 . - . ID=mRNA33;Parent=gene34;Name=rps19;exception=RNA editing;note=putative alternative GUG start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33554.1
LKAM01000005.1 manual exon 24148 24429 . - . Parent=mRNA33
LKAM01000005.1 manual CDS 24148 24429 . - 0 Parent=mRNA33
###
LKAM01000005.1 manual gene 24433 25137 . - . ID=gene35;Name=rpl2
LKAM01000005.1 manual mRNA 24433 25137 . - . ID=mRNA34;Parent=gene35;Name=rpl2-e2;part=2/2;exception=trans-splicing,RNA editing;note=putative stop codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33548.1
LKAM01000005.1 manual exon 24433 25137 . - . Parent=mRNA34
LKAM01000005.1 manual CDS 24433 25137 . - 0 Parent=mRNA34
###
LKAM01000005.1 manual gene 99342 100091 . + . ID=gene36;Name=atp6
LKAM01000005.1 manual mRNA 99342 100091 . + . ID=mRNA35;Parent=gene36;Name=atp6;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33524.1
LKAM01000005.1 manual exon 99342 100091 . + . Parent=mRNA35
LKAM01000005.1 manual CDS 99342 100091 . + 0 Parent=mRNA35
###
LKAM01000006.1 manual gene 61473 61867 . + . ID=gene37;Name=nad5
LKAM01000006.1 manual mRNA 61473 61867 . + . ID=mRNA36;Parent=gene37;Name=nad5-e4;part=3/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33542.1
LKAM01000006.1 manual exon 61473 61867 . + . Parent=mRNA36
LKAM01000006.1 manual CDS 61473 61867 . + 2 Parent=mRNA36
###
LKAM01000006.1 manual gene 330298 331454 . + . ID=gene38;Name=nad7
LKAM01000006.1 manual mRNA 330298 331454 . + . ID=mRNA37;Parent=gene38;Name=nad7-e12;part=1/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33544.1
LKAM01000006.1 manual exon 330298 330440 . + . Parent=mRNA37
LKAM01000006.1 manual CDS 330298 330440 . + 0 Parent=mRNA37
LKAM01000006.1 manual intron 330441 331385 . + . Parent=mRNA37;Name=nad7-i1
LKAM01000006.1 manual exon 331386 331454 . + . Parent=mRNA37
LKAM01000006.1 manual CDS 331386 331454 . + 1 Parent=mRNA37
###
LKAM01000006.1 manual gene 469262 469283 . - . ID=gene39;Name=nad5
LKAM01000006.1 manual mRNA 469262 469283 . - . ID=mRNA38;Parent=gene39;Name=nad5-e3;part=2/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33542.1
LKAM01000006.1 manual exon 469262 469283 . - . Parent=mRNA38
LKAM01000006.1 manual CDS 469262 469283 . - 0 Parent=mRNA38
###
LKAM01000007.1 manual gene 16009 16584 . + . ID=gene40;Name=rpl5
LKAM01000007.1 manual mRNA 16009 16584 . + . ID=mRNA39;Parent=gene40;Name=rpl5;inference=similar to AA sequence:INSD:AJP33549.1
LKAM01000007.1 manual exon 16009 16584 . + . Parent=mRNA39
LKAM01000007.1 manual CDS 16009 16584 . + 0 Parent=mRNA39
###
LKAM01000007.1 manual gene 16589 16891 . + . ID=gene41;Name=rps14
LKAM01000007.1 manual mRNA 16589 16891 . + . ID=mRNA40;Parent=gene41;Name=rps14;inference=similar to AA sequence:RefSeq:YP_009531527.1
LKAM01000007.1 manual exon 16589 16891 . + . Parent=mRNA40
LKAM01000007.1 manual CDS 16589 16891 . + 0 Parent=mRNA40
###
LKAM01000007.1 manual gene 404819 408075 . - . ID=gene42;Name=ccmFC
LKAM01000007.1 manual mRNA 404819 408075 . - . ID=mRNA41;Parent=gene42;Name=ccmFC;inference=similar to AA sequence:INSD:AJP33529.1
LKAM01000007.1 manual exon 404819 405420 . - . Parent=mRNA41
LKAM01000007.1 manual CDS 404819 405420 . - 2 Parent=mRNA41
LKAM01000007.1 manual intron 405421 407279 . - . Parent=mRNA41;Name=ccmFC-i1
LKAM01000007.1 manual exon 407280 408075 . - . Parent=mRNA41
LKAM01000007.1 manual CDS 407280 408075 . - 0 Parent=mRNA41
###
LKAM01000007.1 manual gene 445413 446210 . + . ID=gene43;Name=cox3
LKAM01000007.1 manual mRNA 445413 446210 . + . ID=mRNA42;Parent=gene43;Name=cox3;inference=similar to AA sequence:INSD:AJP33534.1
LKAM01000007.1 manual exon 445413 446210 . + . Parent=mRNA42
LKAM01000007.1 manual CDS 445413 446210 . + 0 Parent=mRNA42
###
LKAM01000007.1 manual gene 446138 446533 . + . ID=gene44;Name=sdh4
LKAM01000007.1 manual mRNA 446138 446533 . + . ID=mRNA43;Parent=gene44;Name=sdh4;inference=similar to AA sequence:INSD:AJP33561.1
LKAM01000007.1 manual exon 446138 446533 . + . Parent=mRNA43
LKAM01000007.1 manual CDS 446138 446533 . + 0 Parent=mRNA43
###
LKAM01000008.1 manual gene 58761 61206 . + . ID=gene45;Name=nad5
LKAM01000008.1 manual mRNA 58761 61206 . + . ID=mRNA44;Parent=gene45;Name=nad5-e12;part=1/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33542.1
LKAM01000008.1 manual exon 58761 58991 . + . Parent=mRNA44
LKAM01000008.1 manual CDS 58761 58991 . + 0 Parent=mRNA44
LKAM01000008.1 manual intron 58992 59982 . + . Parent=mRNA44;Name=nad5-i1
LKAM01000008.1 manual exon 59983 61206 . + . Parent=mRNA44
LKAM01000008.1 manual CDS 59983 61206 . + 0 Parent=mRNA44
###
LKAM01000008.1 manual gene 163667 164845 . + . ID=gene46;Name=ymfrpl2
LKAM01000008.1 manual mRNA 163667 164845 . + . ID=mRNA45;Parent=gene46;Name=ymfrpl2;inference=similar to AA sequence:RefSeq:YP_009306511.1
LKAM01000008.1 manual exon 163667 163988 . + . Parent=mRNA45
LKAM01000008.1 manual CDS 163667 163988 . + 0 Parent=mRNA45
LKAM01000008.1 manual intron 163989 164654 . + . Parent=mRNA45;Name=ymfrpl2-i1
LKAM01000008.1 manual exon 164655 164845 . + . Parent=mRNA45
LKAM01000008.1 manual CDS 164655 164845 . + 2 Parent=mRNA45
###
LKAM01000008.1 manual gene 254797 255849 . + . ID=gene47;Name=rps4
LKAM01000008.1 manual mRNA 254797 255849 . + . ID=mRNA46;Parent=gene47;Name=rps4;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33558.1
LKAM01000008.1 manual exon 254797 255849 . + . Parent=mRNA46
LKAM01000008.1 manual CDS 254797 255849 . + 0 Parent=mRNA46
###
LKAM01000009.1 manual gene 29678 31023 . - . ID=gene48;Name=ymfnad5
LKAM01000009.1 manual mRNA 29678 31023 . - . ID=mRNA47;Parent=gene48;Name=ymfnad5;inference=similar to AA sequence:INSD:AHX81295.1
LKAM01000009.1 manual exon 29678 29827 . - . Parent=mRNA47
LKAM01000009.1 manual CDS 29678 29827 . - 0 Parent=mRNA47
LKAM01000009.1 manual intron 29828 30765 . - . Parent=mRNA47;Name=ymfnad5-i1
LKAM01000009.1 manual exon 30766 31023 . - . Parent=mRNA47
LKAM01000009.1 manual CDS 30766 31023 . - 0 Parent=mRNA47
###
LKAM01000009.1 manual gene 158098 158817 . + . ID=gene49;Name=ccmC
LKAM01000009.1 manual mRNA 158098 158817 . + . ID=mRNA48;Parent=gene49;Name=ccmC;inference=similar to AA sequence:INSD:AJP33528.1
LKAM01000009.1 manual exon 158098 158817 . + . Parent=mRNA48
LKAM01000009.1 manual CDS 158098 158817 . + 0 Parent=mRNA48
###
LKAM01000009.1 manual gene 159496 159978 . + . ID=gene50;Name=rpl10
LKAM01000009.1 manual mRNA 159496 159978 . + . ID=mRNA49;Parent=gene50;Name=rpl10;inference=similar to AA sequence:INSD:AJP33546.1
LKAM01000009.1 manual exon 159496 159978 . + . Parent=mRNA49
LKAM01000009.1 manual CDS 159496 159978 . + 0 Parent=mRNA49
###
LKAM01000010.1 manual gene 38074 39835 . - . ID=gene51;Name=nad7
LKAM01000010.1 manual mRNA 38074 39835 . - . ID=mRNA50;Parent=gene51;Name=nad7-e34;part=2/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33544.1
LKAM01000010.1 manual exon 38074 38317 . - . Parent=mRNA50
LKAM01000010.1 manual CDS 38074 38317 . - 2 Parent=mRNA50
LKAM01000010.1 manual intron 38318 39368 . - . Parent=mRNA50;Name=nad7-i3
LKAM01000010.1 manual exon 39369 39835 . - . Parent=mRNA50
LKAM01000010.1 manual CDS 39369 39835 . - 1 Parent=mRNA50
###
LKAM01000010.1 manual gene 118644 120422 . - . ID=gene52;Name=rps10
LKAM01000010.1 manual mRNA 118644 120422 . - . ID=mRNA51;Parent=gene52;Name=rps10;exception=RNA editing;note=putative start codon created by RNA editing;inference=similar to AA sequence:INSD:AJP33550.1
LKAM01000010.1 manual exon 118644 118744 . - . Parent=mRNA51
LKAM01000010.1 manual CDS 118644 118744 . - 2 Parent=mRNA51
LKAM01000010.1 manual intron 118745 120181 . - . Parent=mRNA51;Name=rps10-i1
LKAM01000010.1 manual exon 120182 120422 . - . Parent=mRNA51
LKAM01000010.1 manual CDS 120182 120422 . - 0 Parent=mRNA51
###
LKAM01000010.1 manual gene 126075 126336 . + . ID=gene53;Name=nad7
LKAM01000010.1 manual mRNA 126075 126336 . + . ID=mRNA52;Parent=gene53;Name=nad7-e5;part=3/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33544.1
LKAM01000010.1 manual exon 126075 126336 . + . Parent=mRNA52
LKAM01000010.1 manual CDS 126075 126336 . + 1 Parent=mRNA52
###
LKAM01000010.1 manual gene 126859 126932 . + . ID=gene54;Name=trnI-CAU;product=tRNA-Ile
LKAM01000010.1 manual tRNA 126859 126932 . + . ID=tRNA2;Parent=gene54;Name=trnI-CAU;product=tRNA-Ile;exception=RNA editing;note=C assumed to be post-transcriptionally modified to lysidine%2C which pairs with A rather than G;inference=similar to DNA sequence:INSD:X53392.1
LKAM01000010.1 manual exon 126859 126932 . + . Parent=tRNA2
###
LKAM01000011.1 manual gene 134326 134786 . - . ID=gene55;Name=nad4
LKAM01000011.1 manual mRNA 134326 134786 . - . ID=mRNA53;Parent=gene55;Name=nad4-e1;part=1/2;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33540.1
LKAM01000011.1 manual exon 134326 134786 . - . Parent=mRNA53
LKAM01000011.1 manual CDS 134326 134786 . - 0 Parent=mRNA53
###
LKAM01000011.1 manual gene 142205 144202 . + . ID=gene56;Name=nad2
LKAM01000011.1 manual mRNA 142205 144202 . + . ID=mRNA54;Parent=gene56;Name=nad2-e12;part=1/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33538.1
LKAM01000011.1 manual exon 142205 142357 . + . Parent=mRNA54
LKAM01000011.1 manual CDS 142205 142357 . + 0 Parent=mRNA54
LKAM01000011.1 manual intron 142358 143808 . + . Parent=mRNA54;Name=nad2-i1
LKAM01000011.1 manual exon 143809 144202 . + . Parent=mRNA54
LKAM01000011.1 manual CDS 143809 144202 . + 0 Parent=mRNA54
###
LKAM01000012.1 manual gene 95476 96669 . + . ID=gene57;Name=cob
LKAM01000012.1 manual mRNA 95476 96669 . + . ID=mRNA55;Parent=gene57;Name=cob;inference=similar to AA sequence:INSD:AJP33531.1
LKAM01000012.1 manual exon 95476 96669 . + . Parent=mRNA55
LKAM01000012.1 manual CDS 95476 96669 . + 0 Parent=mRNA55
###
LKAM01000016.1 manual gene 7560 7747 . + . ID=gene58;Name=nad2
LKAM01000016.1 manual mRNA 7560 7747 . + . ID=mRNA56;Parent=gene58;Name=nad2-e5;part=3/3;exception=trans-splicing;inference=similar to AA sequence:INSD:AJP33538.1
LKAM01000016.1 manual exon 7560 7747 . + . Parent=mRNA56
LKAM01000016.1 manual CDS 7560 7747 . + 2 Parent=mRNA56
###