Release V0.3 #1
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Release V0.3 #1
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Compatibility: * GrowthDynamics 0.6 * Makie 0.17 * Julia 1.6 Note: Last version compat. w/ GrowthDynamics v0.6
- controls for radius filter - controls for plane view
A second plot is displayed underneath the 3d plot that shows a slice through a plane. If `plane` is not `nothing` in `tumorplot`, coordinates are projected into 2d. Controls are added to control orientation and offset of said plane, specifically: - text field for offset from origin (default: lattice midpoint) - +/- buttons to increment/decrement offset - buttons to orient in x,y,z direction and combinations thereof Imports are ordered alphabetically. LinearAlgebra is imported.
ColorMapping now stores a vector of root genotypes and a dictionary mapping every genotype to a color. color_phylo rebuilds the latter on every call, making sure that root genotypes get assigned the same color again. Change the default depth in color_phylo from 1 to 2. Remove `transition` keyword. To be introduced later again.
Remove colormap as a coloring option.
color_lineage colors the children of given root nodes. color_phylo is renamed to color_depth
New kwarg `default` to specify a fallback color if a genotype is not covered, e.g. because the root of the phylogeny isn't in `roots`. In-place version. Further: - Default palette is based on Julia blue. - min_colors only returns transparent for genotype 0.
Have TumorInspector(...) return a struct containing the figure, subplots, color/plane/radius settings for programmatic manipulation. Introduce color settings. - Currently: color lineages and color inner. - Control panel for either option. Radius filter can be switched between = and <=
Note: When squashing combine with beb8f0d
Due to a bug where a call to close(window) results in a segfault, the use of either button would frequently result in the application crashing. Close the window with the title bar controls.
* calculate markersize from neighbor distance * FCC vertex * GeometryBasics v0.4 * missing imports
Fixes accidental reversion of earlier compat changes.
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