Merge pull request #1 from slimgroup/mathoas

CI

.github/workflows/CI.yml

@@ -0,0 +1,57 @@
+name: CI-PhotoAcoustic
+
+on:
+  # Trigger the workflow on push to master or pull request
+  # to be merged in master
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+
+    strategy:
+      fail-fast: false
+
+      matrix:
+        version:
+          - '1.6'
+          - '1.7'
+          - '1.8'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+
+        include:
+          - os: macos-latest
+            version: '1'
+            arch: x64
+
+    steps:
+      - name: Checkout PhotoAcoustic
+        uses: actions/checkout@v2
+
+      - name: Setup julia
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+
+      - name: Run tests
+        uses: julia-actions/julia-runtest@latest
+
+      - name: Install Examples packages
+        run: |
+          julia -e 'using Pkg;Pkg.add(["Statistics", "LinearAlgebra", "PyPlot", "IterativeSolvers"])'
+
+      - name: Rune examples
+        run: |
+          julia --color=yes --project examples/basic_photo_operator_2d.jl
+          julia --color=yes --project examples/basic_photo_operator_3d.jl
+          julia --color=yes --project examples/least_squares.jl

.github/workflows/CompatHelper.yml

@@ -0,0 +1,16 @@
+name: CompatHelper
+
+on:
+  schedule:
+    - cron: '00 00 * * *'
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/TagBot.yml

@@ -0,0 +1,15 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/docs.yml

@@ -0,0 +1,29 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - main
+    tags: '*'
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: julia-actions/setup-julia@latest
+
+      - name: Install dependencies
+        run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+
+      - name: Convert notebook
+        run: |
+          pip install --upgrade jupyter Pygments
+          jupyter nbconvert --to markdown --output-dir='../../docs/src' --output LearnedPrior
+        working-directory: examples/notebooks/
+
+      - name: Build and deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
+        run: julia --project=docs/ docs/make.jl