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add TCRmodel2
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slowkow committed Apr 12, 2024
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Expand Up @@ -410,6 +410,16 @@ https://github.com/phbradley/TCRdock
Bradley P. [Structure-based prediction of T cell receptor:peptide-MHC interactions.](https://pubmed.ncbi.nlm.nih.gov/36661395/) Elife. 2023;12: e82813. doi:10.7554/eLife.82813

### TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning

Python scripts

https://github.com/piercelab/tcrmodel2

> This method, named TCRmodel2, allows users to submit sequences through an easy-to-use interface and shows similar or greater accuracy than AlphaFold and other methods to model TCR鈥損eptide鈥揗HC complexes based on benchmarking. It can generate models of complexes in 15 minutes, and output models are provided with confidence scores and an integrated molecular viewer
Yin R, Ribeiro-Filho HV, Lin V, Gowthaman R, Cheung M, Pierce BG. [TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.](https://www.ncbi.nlm.nih.gov/pubmed/37140040) Nucleic Acids Res. 2023;51: W569鈥揥576. doi:10.1093/nar/gkad356

### TITAN - Tcr epITope bimodal Attention Networks

Python package
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