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add TCRconv
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slowkow committed Apr 11, 2024
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Expand Up @@ -357,6 +357,16 @@ https://github.com/ncborcherding/scRepertoire
Borcherding, N., Bormann, N. L. & Kraus, G. [scRepertoire: An R-based toolkit for single-cell immune receptor analysis.](https://pubmed.ncbi.nlm.nih.gov/32789006/) F1000Res. 9, 47 (2020)

### TCRconv

Python package

https://github.com/emmijokinen/TCRconv

> TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
Jokinen E, Dumitrescu A, Huuhtanen J, Gligorijevi膰 V, Mustjoki S, Bonneau R, et al. Predicting recognition between T cell receptors and epitopes using contextualized motifs. bioRxiv. 2022. p. 2022.05.23.493034. doi:10.1101/2022.05.23.493034

### TCRGP

Python scripts
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