Optimizing duplicate remover #45
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…plicate-remover to uniq
…sam format instead of bam format.
…owing option to use more threads for compression/decompression
…d how good reads and bases are tabulated for in and out to be reported in the stats output.
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Changes to the
uniqcommand for direct use of htslib instead of the wrapper that we've been using, and use of a thread pool for i/o and compression work. Overall faster and does not require conversion of output to bam afterwards.