@smithlabcode

Smith Lab

A computational biology research group at USC

  • R 2 Updated Feb 7, 2017
  • A pipeline for analyzing DNA methylation data from bisulfite sequencing.

    C 17 14 Updated Jan 16, 2017
  • C++ code library that includes functions used in many of the Smith lab projects

    C++ 1 1 Updated Dec 13, 2016
  • WALT is a read mapping program for bisulfite sequencing DNA methylation studies.

    C++ 7 3 Updated Dec 1, 2016
  • The DME algorithm for discovering motifs that distinguish two sets of sequences.

    C++ Updated Nov 2, 2016
  • Software for predicting library complexity and genome coverage in high-throughput sequencing.

    C 17 5 Updated Sep 13, 2016
  • Riborex: Fast and flexible identification of differential translation from Ribo-seq data

    R 2 1 Updated Sep 1, 2016
  • A software tool to identify dispersed epigenetic regions from ChIP-seq data

    C 3 Updated Jul 26, 2016
  • DEPRECATED: ACTIVELY MANAGED SOFTWARE IN METHPIPE REPOSITORY.

    C++ 1 Updated Apr 12, 2016
  • Short reads mapper for next-generation sequencing data (DNA-seq, BS-seq, etc)

    C++ 2 2 Updated Jul 21, 2015
  • Amordad is a database engine for high dimensional data

    C++ 2 Updated Jun 8, 2015
  • Piranha is a peak-caller for CLIP- and RIP-seq data

    C++ 3 Updated May 22, 2015
  • Zagros is an algorithm for motif discovery in CLIP-seq data

    C++ Updated Nov 4, 2014
  • C++ Updated Aug 4, 2014
  • C++ Updated May 1, 2014
  • Simultaneously estimate hydroxymethylation (5hmC) and methylation (5mC) levels

    C++ 1 1 Updated Apr 25, 2014