feat: adapt to fgsea updates, configure fgsea precision by minimum ac…

…hievable p-value
snakemake-workflows · Mar 29, 2022 · dcd77ca · dcd77ca
1 parent bf3aa6f
commit dcd77ca
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/config/config.yaml b/config/config.yaml
@@ -83,7 +83,8 @@ enrichment:
     # if activated, you need to provide a GMT file with gene sets of interest
     gene_sets_file: "resources/gene_sets/dummy.gmt"
     fdr_gene_set: 0.05
-    eps: 0.0
+    # minimum achievable p-value  (equivalent to the reciprocal of the number of permutations, see fgsea docs)
+    eps: 1e-50
   spia:
     # tool is only run if set to `true`
     activate: false