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fix: Force sacct to look at the last 2 days #9

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merged 5 commits into from
Jan 5, 2024
Merged

fix: Force sacct to look at the last 2 days #9

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944772c
Force sacct to look at the last 4 weeks
fgvieira Dec 14, 2023
dd507e4
Reduce time window
fgvieira Dec 14, 2023
b54b393
Extra debug logs
fgvieira Dec 14, 2023
a952c0d
Code format
fgvieira Dec 14, 2023
cdad8d5
Fix long line
fgvieira Dec 14, 2023
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7 changes: 6 additions & 1 deletion snakemake_executor_plugin_slurm/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -209,7 +209,7 @@ async def check_active_jobs(
(status_of_jobs, sacct_query_duration) = await self.job_stati(
# -X: only show main job, no substeps
f"sacct -X --parsable2 --noheader --format=JobIdRaw,State "
f"--name {self.run_uuid}"
f"--starttime now-2days --endtime now --name {self.run_uuid}"
)
if status_of_jobs is None and sacct_query_duration is None:
self.logger.debug(f"could not check status of job {self.run_uuid}")
Expand All @@ -220,6 +220,10 @@ async def check_active_jobs(
active_jobs_ids_with_current_sacct_status = (
set(status_of_jobs.keys()) & active_jobs_ids
)
self.logger.debug(
f"active_jobs_ids_with_current_sacct_status are: "
f"{active_jobs_ids_with_current_sacct_status}"
)
active_jobs_seen_by_sacct = (
active_jobs_seen_by_sacct
| active_jobs_ids_with_current_sacct_status
Expand All @@ -231,6 +235,7 @@ async def check_active_jobs(
active_jobs_seen_by_sacct
- active_jobs_ids_with_current_sacct_status
)
self.logger.debug(f"missing_sacct_status are: {missing_sacct_status}")
if not missing_sacct_status:
break
if i >= status_attempts - 1:
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