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Issues: snakemake/snakemake
Announcement: Snakemake 8.0 released, including the removal o...
#2409
opened Aug 15, 2023 by
johanneskoester
Open
21
Announcement: Snakemake hackathon 2025 at CERN, call for part...
#3123
opened Oct 7, 2024 by
johanneskoester
Open
3
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Issues list
Feature: specify negative number of cores
enhancement
New feature or request
#3621
opened Jun 10, 2025 by
Hugovdberg
Add New feature or request
--no-temp
flag synonymous to --notemp
flag
enhancement
#3618
opened Jun 7, 2025 by
nikostr
Inheriting rules from a module fails to pull the environment definition
bug
Something isn't working
#3616
opened Jun 6, 2025 by
LukaP-BB
Incorrect omission of post-deploy scripts when using gitlab source provider for a module
bug
Something isn't working
#3615
opened Jun 6, 2025 by
LukaP-BB
No default schema variables loaded when skipping schema validation inside of remote jobs
bug
Something isn't working
#3614
opened Jun 5, 2025 by
visze
Request: Allow input_name=None in inputs section
enhancement
New feature or request
#3612
opened Jun 4, 2025 by
royjacobson
Namespace is occupied by hidden variables
bug
Something isn't working
#3610
opened May 29, 2025 by
pdimens
Is there an example for how to use the --wait-for-files-file option?
#3599
opened May 23, 2025 by
dandaman
Support for importing module configs
enhancement
New feature or request
#3591
opened May 20, 2025 by
twillis209
Docs: Artifacts That can be added Docsets, Biolerplate(s), Cheatsheet(s)
#3584
opened May 20, 2025 by
rohan-ibn-tariq
429 errors due to Github changes + use of workflow.source_path()
bug
Something isn't working
#3580
opened May 19, 2025 by
isaacvock
Optimize the code that throws errors due to Python version compatibility issues when using wrapper with container?
enhancement
New feature or request
#3566
opened May 8, 2025 by
x1e5c
Support pixi for conda-frontend
enhancement
New feature or request
#3565
opened May 8, 2025 by
hwalinga
Difference when quoting [""] with :q and shlex.join
bug
Something isn't working
#3560
opened May 5, 2025 by
danpal96
Endless rerun of following jobs with a checkpoint output updated.
bug
Something isn't working
#3559
opened May 3, 2025 by
Hocnonsense
adding .snakemake_ignore similar to .git_ignore
enhancement
New feature or request
#3557
opened May 2, 2025 by
MatteoLacki
Mermaid-js output flow connections are incorrect
bug
Something isn't working
#3556
opened May 1, 2025 by
eeidsness
Expand/collect from dataframe
enhancement
New feature or request
#3555
opened Apr 30, 2025 by
fgvieira
local wrapper path should be considered relative to the snakefile
enhancement
New feature or request
#3548
opened Apr 25, 2025 by
Hocnonsense
Documentation error: incorrect varible name in example for lookup()
bug
Something isn't working
#3541
opened Apr 19, 2025 by
banfelder
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