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#628 opened Sep 16, 2020 by johanneskoester
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511 Open 299 Closed
511 Open 299 Closed
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option to change the script for cluster computation
#1345 opened Jan 21, 2022 by thkuo
JSONDecodeError while handling job success on LSF bug
#1342 opened Jan 20, 2022 by omarelgarwany
Print shell commands from run block enhancement
#1338 opened Jan 18, 2022 by alexandre-nadin
2
Use checksums instead of time stamps for certain files enhancement
#1337 opened Jan 17, 2022 by Hoeze
multiext support for named output enhancement
#1335 opened Jan 14, 2022 by fgvieira
Snakemake temp() bug
#1333 opened Jan 13, 2022 by kstangline
groupjob fails when downstream of checkpoint (re-evaluation of DAG bug?) bug
#1331 opened Jan 13, 2022 by Maarten-vd-Sande
Rapidly completing job hangs instead of finishing bug
#1323 opened Jan 10, 2022 by LiterallyUniqueLogin
Allow input functions that return a list of lists of filenames
#1319 opened Jan 6, 2022 by feilchenfeldt
3
IncompleteFilesException while using --rerun-incomplete
#1318 opened Jan 6, 2022 by tbigot
ruleorder: does not work properly with multiple downstream rules bug
#1316 opened Jan 5, 2022 by nick-youngblut
snakemake documentation: 404 error for referenced file bug
#1315 opened Dec 26, 2021 by nashda
3
snakemake format_wildcards error "TypeError: keywords must be strings" but my wildcards are strings? bug
#1314 opened Dec 23, 2021 by anitato
2
Snakemake executing code multiple times bug
#1313 opened Dec 22, 2021 by carruizper
1
S3.remote not deleting downloaded files when running with cluster profile with --no-shared-fs bug
#1309 opened Dec 20, 2021 by boulund
Unable to use LocalGitFile
#1308 opened Dec 20, 2021 by Smeds
2
S3.remote deleting input files and redownlading them & not deleting local files after upload bug
#1307 opened Dec 17, 2021 by inti4digbi
Imports from __future__ fail bug
#1306 opened Dec 16, 2021 by Hugovdberg
Linter identifies sed command as an absolute path... bug
#1305 opened Dec 16, 2021 by dnanto
1
Parameter wrapper-prefix cannot be passed to subworkflows bug
#1303 opened Dec 15, 2021 by qifei9
--use-conda ignored for local rule with using Tibanna executor bug
#1302 opened Dec 14, 2021 by nate-d-olson
Use modules from private github repository enhancement
#1301 opened Dec 14, 2021 by lpagie
Exception has occurred: TypeError 'NoneType' object is not iterable bug
#1298 opened Dec 10, 2021 by pz-max
Print statements outside of rules are printed each time a rule using "Run" containing a print() statement is executed bug
#1297 opened Dec 9, 2021 by jgriffin-encoded
2
Assign kubernetes node labels to rules enhancement
#1278 opened Nov 24, 2021 by cademirch
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