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1,113 Open 808 Closed
1,113 Open 808 Closed
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Issues list

Feature: specify negative number of cores enhancement New feature or request
#3621 opened Jun 10, 2025 by Hugovdberg
2
Add --no-temp flag synonymous to --notemp flag enhancement New feature or request
#3618 opened Jun 7, 2025 by nikostr
Inheriting rules from a module fails to pull the environment definition bug Something isn't working
#3616 opened Jun 6, 2025 by LukaP-BB
Incorrect omission of post-deploy scripts when using gitlab source provider for a module bug Something isn't working
#3615 opened Jun 6, 2025 by LukaP-BB
No default schema variables loaded when skipping schema validation inside of remote jobs bug Something isn't working
#3614 opened Jun 5, 2025 by visze
Request: Allow input_name=None in inputs section enhancement New feature or request
#3612 opened Jun 4, 2025 by royjacobson
Namespace is occupied by hidden variables bug Something isn't working
#3610 opened May 29, 2025 by pdimens
1
Is there an example for how to use the --wait-for-files-file option?
#3599 opened May 23, 2025 by dandaman
Support for importing module configs enhancement New feature or request
#3591 opened May 20, 2025 by twillis209
Docs: Artifacts That can be added Docsets, Biolerplate(s), Cheatsheet(s)
#3584 opened May 20, 2025 by rohan-ibn-tariq
429 errors due to Github changes + use of workflow.source_path() bug Something isn't working
#3580 opened May 19, 2025 by isaacvock
1
How to install from source code
#3579 opened May 19, 2025 by Bioinfo-dataming
1
Optimize the code that throws errors due to Python version compatibility issues when using wrapper with container? enhancement New feature or request
#3566 opened May 8, 2025 by x1e5c
Support pixi for conda-frontend enhancement New feature or request
#3565 opened May 8, 2025 by hwalinga
2
--use-conda not working with homebrew mamba installation
#3561 opened May 5, 2025 by clescoat
1
Difference when quoting [""] with :q and shlex.join bug Something isn't working
#3560 opened May 5, 2025 by danpal96
Endless rerun of following jobs with a checkpoint output updated. bug Something isn't working
#3559 opened May 3, 2025 by Hocnonsense
Logging broken yet again bug Something isn't working
#3558 opened May 2, 2025 by lczech
@cademirch
11
adding .snakemake_ignore similar to .git_ignore enhancement New feature or request
#3557 opened May 2, 2025 by MatteoLacki
3
Mermaid-js output flow connections are incorrect bug Something isn't working
#3556 opened May 1, 2025 by eeidsness
Expand/collect from dataframe enhancement New feature or request
#3555 opened Apr 30, 2025 by fgvieira
Grouped job resource overallocation
#3552 opened Apr 26, 2025 by ASLeonard
local wrapper path should be considered relative to the snakefile enhancement New feature or request
#3548 opened Apr 25, 2025 by Hocnonsense
--use-conda unpredictable bug Something isn't working
#3544 opened Apr 21, 2025 by pesho-ivanov
1
Documentation error: incorrect varible name in example for lookup() bug Something isn't working
#3541 opened Apr 19, 2025 by banfelder
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