Setting workflow.use_conda = True
in Snakefile stopped working
#2434
Labels
bug
Something isn't working
workflow.use_conda = True
in Snakefile stopped working
#2434
Snakemake version
7.32.3
Describe the bug
In version 7.16 or so, I was able to add the line
workflow.use_conda = True
into my snakefile to not have to bother setting it manually on the command line.Logs
Minimal example
Any valid snakefile with the line
workflow.use_conda = True
.Additional context
I searched this repo and stackoverflow, but there was no mention of why using this line is not supported anymore. So I assume it was an accident and hence a bug.
If there is a new way to setup snakemake to use conda by default, without having to specify any extra command line arguments such as
--use-conda
or--config
, I would be happy to know.The text was updated successfully, but these errors were encountered: