Error: could not execute bowtie2 binary #110
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Hi,
I have not solved this problem. It seems that this software was built on
python2. But my version python/cpu/2.7.15 did not work on it.
Best,
Boyan
qiileee <notifications@github.com> 于2020年9月24日周四 上午12:13写道：
… I used python2.7, but when I installed dependencies biopython, there is an
error that I must used python3.7.
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Hi,
I tried to use "pip" to install these required dependencies instead of "conda", and there is no errors reported in test module. Maybe you can retry it. Thanks for your repy.
Best,
Qiilee
------------------ 原始邮件 ------------------
发件人: "snayfach/MIDAS" <notifications@github.com>;
发送时间: 2020年9月27日(星期天) 中午12:23
收件人: "snayfach/MIDAS"<MIDAS@noreply.github.com>;
抄送: "eeeer"<1246858671@qq.com>;"Comment"<comment@noreply.github.com>;
主题: Re: [snayfach/MIDAS] Error: could not execute bowtie2 binary (#110)
Hi,
I have not solved this problem. It seems that this software was built on
python2. But my version python/cpu/2.7.15 did not work on it.
Best,
Boyan
qiileee <notifications@github.com> 于2020年9月24日周四 上午12:13写道：
> I used python2.7, but when I installed dependencies biopython, there is an
> error that I must used python3.7.
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <#110 (comment)>, or
> unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AF4MBKUZAUH5S4KDQ6GXKHTSHLBPZANCNFSM4RPOARLA>
> .
>
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Hi,
Which version of Python do you use? Thank you!
Best,
Boyan
qiileee <notifications@github.com> 于2020年9月27日周日 上午12:34写道：
… Hi,
I tried to use "pip" to install these required dependencies instead of
"conda", and there is no errors reported in test module. Maybe you can
retry it. Thanks for your repy.
Best,
Qiilee
------------------ 原始邮件 ------------------
发件人: "snayfach/MIDAS" ***@***.***>;
发送时间: 2020年9月27日(星期天) 中午12:23
***@***.***>;
***@***.***>;"Comment"<
***@***.***>;
主题: Re: [snayfach/MIDAS] Error: could not execute bowtie2 binary
(#110)
Hi,
I have not solved this problem. It seems that this software was built on
python2. But my version python/cpu/2.7.15 did not work on it.
Best,
Boyan
qiileee ***@***.***> 于2020年9月24日周四 上午12:13写道：
> I used python2.7, but when I installed dependencies biopython, there
is an
> error that I must used python3.7.
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <
#110 (comment)>,
or
> unsubscribe
> <
https://github.com/notifications/unsubscribe-auth/AF4MBKUZAUH5S4KDQ6GXKHTSHLBPZANCNFSM4RPOARLA>
> .
>
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Hi,
python2.7
Best,
Qiilee
…---Original---
From: "Boyan Zhou"<notifications@github.com>
Date: Sun, Sep 27, 2020 22:43 PM
To: "snayfach/MIDAS"<MIDAS@noreply.github.com>;
Cc: "Comment"<comment@noreply.github.com>;"qiileee"<1246858671@qq.com>;
Subject: Re: [snayfach/MIDAS] Error: could not execute bowtie2 binary (#110)
Hi,
Which version of Python do you use? Thank you!
Best,
Boyan
qiileee <notifications@github.com> 于2020年9月27日周日 上午12:34写道：
> Hi,
> I tried to use "pip" to install these required dependencies instead of
> "conda", and there is no errors reported in test module. Maybe you can
> retry it. Thanks for your repy.
> Best,
> Qiilee
> ------------------&nbsp;原始邮件&nbsp;------------------
> 发件人: "snayfach/MIDAS" <notifications@github.com&gt;;
> 发送时间:&nbsp;2020年9月27日(星期天) 中午12:23
> 收件人:&nbsp;"snayfach/MIDAS"<MIDAS@noreply.github.com&gt;;
> 抄送:&nbsp;"eeeer"<1246858671@qq.com&gt;;"Comment"<
> comment@noreply.github.com&gt;;
> 主题:&nbsp;Re: [snayfach/MIDAS] Error: could not execute bowtie2 binary
> (#110)
>
>
>
>
>
> Hi,
> I have not solved this problem. It seems that this software was built on
> python2. But my version python/cpu/2.7.15 did not work on it.
>
> Best,
> Boyan
>
> qiileee <notifications@github.com&gt; 于2020年9月24日周四 上午12:13写道：
>
> &gt; I used python2.7, but when I installed dependencies biopython, there
> is an
> &gt; error that I must used python3.7.
> &gt;
> &gt; —
> &gt; You are receiving this because you authored the thread.
> &gt; Reply to this email directly, view it on GitHub
> &gt; <
> #110 (comment)&gt;,
> or
> &gt; unsubscribe
> &gt; <
> https://github.com/notifications/unsubscribe-auth/AF4MBKUZAUH5S4KDQ6GXKHTSHLBPZANCNFSM4RPOARLA&gt;
>
> &gt; .
> &gt;
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub, or unsubscribe.
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
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> unsubscribe
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> .
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Thank you for your kindly help!
qiileee <notifications@github.com> 于2020年9月27日周日 上午10:55写道：
… Hi,
python2.7
Best,
Qiilee
---Original---
From: "Boyan ***@***.***>
Date: Sun, Sep 27, 2020 22:43 PM
To: ***@***.***>;
Cc: ***@***.******@***.***>;
Subject: Re: [snayfach/MIDAS] Error: could not execute bowtie2 binary
(#110)
Hi,
Which version of Python do you use? Thank you!
Best,
Boyan
qiileee ***@***.***> 于2020年9月27日周日 上午12:34写道：
> Hi,
> I tried to use "pip" to install these required dependencies instead
of
> "conda", and there is no errors reported in test module. Maybe you
can
> retry it. Thanks for your repy.
> Best,
> Qiilee
> ------------------&nbsp;原始邮件&nbsp;------------------
> 发件人: "snayfach/MIDAS" ***@***.***&gt;;
> 发送时间:&nbsp;2020年9月27日(星期天) 中午12:23
> ***@***.***&gt;;
> ***@***.***&gt;;"Comment"<
> ***@***.***&gt;;
> 主题:&nbsp;Re: [snayfach/MIDAS] Error: could not execute bowtie2
binary
> (#110)
>
>
>
>
>
> Hi,
> I have not solved this problem. It seems that this software was built
on
> python2. But my version python/cpu/2.7.15 did not work on it.
>
> Best,
> Boyan
>
> qiileee ***@***.***&gt; 于2020年9月24日周四 上午12:13写道：
>
> &gt; I used python2.7, but when I installed dependencies
biopython, there
> is an
> &gt; error that I must used python3.7.
> &gt;
> &gt; —
> &gt; You are receiving this because you authored the thread.
> &gt; Reply to this email directly, view it on GitHub
> &gt; <
>
#110 (comment)&gt;,
> or
> &gt; unsubscribe
> &gt; <
>
https://github.com/notifications/unsubscribe-auth/AF4MBKUZAUH5S4KDQ6GXKHTSHLBPZANCNFSM4RPOARLA&gt;
>
> &gt; .
> &gt;
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub, or unsubscribe.
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
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or
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> .
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Hi,
I had a problem when I used "run_midas.py". It reported "Error: could not execute bowtie2 binary: /gpfs/data/lilab/home/zhoub03/software/MIDAS/bin/Linux/bowtie2
(exited with error code 127)". However that "bowtie2" was under the path and executable. I also downloaded bowtie2-2.3.2-linux-x86_64.zip and copied the new bowtie2 binaries to the target path. It still reported the same error.
I would appreciate it if you could help me solve this problem.
Thank you so much!
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