mzid v1.1 only

sneumann · Jan 23, 2015 · c541ab2 · c541ab2
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commit c541ab2
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Showing 4 changed files with 11 additions and 5 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: mzR
 Type: Package
 Title: parser for netCDF, mzXML, mzData and mzML and mzIdentML files
        (mass spectrometry data)
-Version: 2.1.3
+Version: 2.1.4
 Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou
 Maintainer: Bernd Fischer <bernd.fischer@embl.de>, 
 	    Steffen Neumann <sneumann@ipb-halle.de>, 

diff --git a/NEWS b/NEWS
@@ -1,5 +1,10 @@
+CHANGES IN VERSION 2.1.4
+------------------------
+ o documentation and vignette: mzIdentML version 1.1 support only
+   [2015-01-23 Fri]
+
 CHANGES IN VERSION 2.1.1
--------------------------
+------------------------
  o remove dependency on faahKO
 
 CHANGES IN VERSION 1.99.4

diff --git a/man/openMSfile.Rd b/man/openMSfile.Rd
@@ -36,7 +36,8 @@
 
   The \code{openIDfile} constructor will create a new format-specifc
   \code{mzR} object, open 'filename' file and all information is
-  loaded as a Rcpp module. The mzid format is supported throught \code{pwiz} backend.
+  loaded as a Rcpp module. The mzid format is supported throught
+  \code{pwiz} backend. Only mzIdentML 1.1 is supported.
 
   % If the object was created manually with e.g. new("mzR"), then
   % initializeRamp() will open the given file. An mzR object can be

diff --git a/vignettes/mzR.Rnw b/vignettes/mzR.Rnw
@@ -154,8 +154,8 @@ close(aa)
 
 \subsection{\texttt{mzIdentML} files}
 
-You can use \Rfunction{openIDfile} to read a \texttt{mzIdentML} file,
-which use the pwiz backend.
+You can use \Rfunction{openIDfile} to read a \texttt{mzIdentML} file
+(version 1.1), which use the pwiz backend.
 
 <<openid>>=
 library(mzR)