Merge pull request #234 from simontorres/rename_project

Finished first stage of project renaming, all test successful.

.travis.yml

@@ -13,7 +13,7 @@ before_install:
 
 
 install:
-- export PATH="$PATH:$HOME/build/soar-telescope/goodman/dcrbin"
+- export PATH="$PATH:$HOME/build/soar-telescope/goodman_pipeline/dcrbin"
 
 - sudo apt-get update
 
@@ -37,7 +37,7 @@ install:
 
 # Create astroconda virtual environment
 - conda env create -q python=$TRAVIS_PYTHON_VERSION -f environment.yml
-- source activate goodman
+- source activate goodman_pipeline
 
 # install
 - python setup.py test

README.md

@@ -1,7 +1,7 @@
 # Goodman High Throughput Spectrograph Data Reduction Pipeline
 
-[![Build Status](https://travis-ci.org/soar-telescope/goodman.svg?branch=master)](https://travis-ci.org/soar-telescope/goodman)
-[![Coverage Status](https://coveralls.io/repos/github/soar-telescope/goodman/badge.svg?branch=master)](https://coveralls.io/github/soar-telescope/goodman?branch=master)
+[![Build Status](https://travis-ci.org/soar-telescope/goodman_pipeline.svg?branch=master)](https://travis-ci.org/soar-telescope/goodman_pipeline)
+[![Coverage Status](https://coveralls.io/repos/github/soar-telescope/goodman_pipeline/badge.svg?branch=master)](https://coveralls.io/github/soar-telescope/goodman_pipeline?branch=master)
 [![Documentation Status](https://readthedocs.org/projects/goodman/badge/?version=latest)](http://goodman.readthedocs.io/en/latest/?badge=latest)
 [![astropy](http://img.shields.io/badge/powered%20by-AstroPy-orange.svg?style=flat)](http://www.astropy.org/)
 

docs/conf.py

@@ -31,7 +31,7 @@
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 
-__version__ = __import__('pipeline').__version__
+__version__ = __import__('goodman_pipeline').__version__
 
 extensions = ['sphinx.ext.todo',
               'sphinx.ext.coverage',

docs/index.rst

@@ -12,10 +12,10 @@
 Welcome to the Goodman HTS Pipeline Documentation
 =================================================
 
-.. image:: https://travis-ci.org/soar-telescope/goodman.svg?branch=master
-    :target: https://travis-ci.org/soar-telescope/goodman
-.. image:: https://coveralls.io/repos/github/soar-telescope/goodman/badge.svg?branch=master
-    :target: https://coveralls.io/github/soar-telescope/goodman?branch=master
+.. image:: https://travis-ci.org/soar-telescope/goodman_pipeline.svg?branch=master
+    :target: https://travis-ci.org/soar-telescope/goodman_pipeline
+.. image:: https://coveralls.io/repos/github/soar-telescope/goodman_pipeline/badge.svg?branch=master
+    :target: https://coveralls.io/github/soar-telescope/goodman_pipeline?branch=master
 .. image:: https://readthedocs.org/projects/goodman/badge/?version=latest
     :target: http://goodman.readthedocs.io/en/latest/?badge=latest
     :alt: Documentation Status

environment.yml

@@ -1,4 +1,4 @@
-name: goodman
+name: goodman_pipeline
 channels:
   - astroconda
 dependencies:

pipeline/core/core.py → goodman_pipeline/core/core.py

@@ -32,7 +32,7 @@
 
 from . import check_version
 
-__version__ = __import__('pipeline').__version__
+__version__ = __import__('goodman_pipeline').__version__
 
 log = logging.getLogger(__name__)
 
@@ -2731,8 +2731,9 @@ def _load_nist_list(self, **kwargs):
         """Load all csv files from strong lines in NIST."""
         nist_path = kwargs.get(
             'path',
-            os.path.join(os.path.dirname(sys.modules['pipeline'].__file__),
-                         'data/nist_list'))
+            os.path.join(os.path.dirname(
+                sys.modules['goodman_pipeline'].__file__),
+                'data/nist_list'))
         assert os.path.isdir(nist_path)
         nist_files = glob.glob(os.path.join(nist_path, "*.txt"))
         for nist_file in nist_files:

pipeline/core/tests/test_check_version.py → goodman_pipeline/core/tests/test_check_version.py

@@ -3,9 +3,9 @@
 
 import unittest
 
-from pipeline.core import check_version
+from goodman_pipeline.core import check_version
 
-__version__ = __import__('pipeline').__version__
+__version__ = __import__('goodman_pipeline').__version__
 
 
 class TestVersionChecker(unittest.TestCase):

pipeline/core/tests/test_core.py → goodman_pipeline/core/tests/test_core.py

@@ -150,7 +150,7 @@ def setUp(self):
         # expected master flat to be retrieved by get_best_flat
         self.reference_flat_name = 'master_flat_1200m2_0.84_dome.fits'
         # location of sample flats
-        self.flat_path = 'pipeline/data/test_data/master_flat'
+        self.flat_path = 'goodman_pipeline/data/test_data/master_flat'
         slit = re.sub('[A-Za-z" ]',
                       '',
                       self.master_flat.header['SLIT'])
@@ -616,7 +616,8 @@ class ReferenceDataTest(TestCase):
 
     def setUp(self):
         self.rd = ReferenceData(
-            reference_dir=os.path.join(os.getcwd(), 'pipeline/data/ref_comp'))
+            reference_dir=os.path.join(os.getcwd(),
+                                       'goodman_pipeline/data/ref_comp'))
         self.ccd = CCDData(data=np.ones((800, 2000)),
                            meta=fits.Header(),
                            unit='adu')