Multihit aggregation outputs dbtype alignment_res

soedinglab · Aug 13, 2019 · f3c983c · f3c983c
1 parent d465b0f
commit f3c983c
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/MMseqsBase.cpp b/src/MMseqsBase.cpp
@@ -259,8 +259,8 @@ std::vector<Command> baseCommands = {
                 "<i:querySetDB> <i:targetSetDB> <i:resultDB> <o:pvalDB>",
                 CITATION_MMSEQS2,{{"querySetDB",  DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA, &DbValidator::sequenceDb },
                                          {"targetSetDB", DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA, &DbValidator::sequenceDb },
-                                         {"resultDB", DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA, &DbValidator::genericDb },
-                                         {"pvalDB", DbType::ACCESS_MODE_OUTPUT, DbType::NEED_DATA, &DbValidator::genericDb },
+                                         {"resultDB", DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA, &DbValidator::resultDb },
+                                         {"pvalDB", DbType::ACCESS_MODE_OUTPUT, DbType::NEED_DATA, &DbValidator::resultDb },
                                          {"tmpDir", DbType::ACCESS_MODE_OUTPUT, DbType::NEED_DATA, &DbValidator::directory }}},
         {"mergeresultsbyset",    mergeresultsbyset,    &par.threadsandcompression,COMMAND_MULTIHIT,
                 "Merge results from multiple orfs back to their respective contig",

diff --git a/src/multihit/Aggregation.cpp b/src/multihit/Aggregation.cpp
@@ -50,7 +50,7 @@ int Aggregation::run() {
     reader.open(DBReader<unsigned int>::LINEAR_ACCCESS);
 
     std::string outputDBIndex = outputDbName + ".index";
-    DBWriter writer(outputDbName.c_str(), outputDBIndex.c_str(), threads, compressed, Parameters::DBTYPE_GENERIC_DB);
+    DBWriter writer(outputDbName.c_str(), outputDBIndex.c_str(), threads, compressed, Parameters::DBTYPE_ALIGNMENT_RES);
     writer.open();
     Debug::Progress progress(reader.getSize());