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43 Open 24 Closed
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Issues list

WARNING: 'model_1_ptm' not found WARNING: 'model_2_ptm' not found
#178 opened Jul 2, 2024 by wendi-luo
The Fold Conditioning notebook seems to be broken
#177 opened Jul 1, 2024 by ajasja
I can't see prediction of cyclic peptide example
#176 opened Jun 24, 2024 by kimdn
error in cyclic design notebook
#175 opened Jun 19, 2024 by overlord1647
MMSEQ2 NCBI labels (how can we keep them)
#174 opened Jun 6, 2024 by MishterBluesky
binders designed don't binds at the hotspots of the target chain.
#172 opened Apr 10, 2024 by rocke2020
Is it preferable for the "con" metric to have a smaller value during the optimization process?
#171 opened Feb 20, 2024 by milkboylyf
converting other MPNN checkpoints for support in ColabDesign and JAX
#165 opened Dec 12, 2023 by adrienchaton
8
Locally Run ColabDesign
#162 opened Oct 22, 2023 by Leo-T-Zang
Is the "i_pae" score in the designability_test.py the same as pAE_interaction?
#161 opened Sep 29, 2023 by SantiagoMille
Can af_cyc_design generate cyclic pepitide with D-Amino acid
#160 opened Sep 28, 2023 by yrq3027
1
Contigs messed up with partial diffusion and manual symmetry
#158 opened Aug 25, 2023 by ali-j-scott
How to continue a design run?
#157 opened Jul 26, 2023 by amin-sagar
Partially folding a structure using AF
#156 opened Jul 19, 2023 by aravinda1879
fix_pos in af/fixbb
#155 opened Jul 11, 2023 by dandaman
2
Do the soft iterations in pssm_semigreedy obey the bias matrix
#153 opened Jul 4, 2023 by amin-sagar
Is it possible to bypass the design step of AfDesign?
#152 opened Jun 27, 2023 by johnnytam100
How to get PAE files when running RFdiffusion
#145 opened May 24, 2023 by remybonnav
Translate colab for RFdiffusion to a jupyter notebook?
#144 opened May 23, 2023 by remybonnav
Allow to select the Complex_beta_ckpt model in RFdiffusion colab?
#143 opened May 23, 2023 by remybonnav
Patch fix_partial_contigs when residue numbering in PDB has a gap
#142 opened May 15, 2023 by data2code
2
MPNN designed sequence not separated correctly with multiple targets and multiple binders
#141 opened May 13, 2023 by data2code
2
Any plans to add af2seq to the colab design
#140 opened May 11, 2023 by Lyang556
atom index in af.prep.prep_pdb
#139 opened May 10, 2023 by data2code
1
where is the output file when finish the model.design_3stage() run?
#135 opened Apr 29, 2023 by zzy221127
1
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