Fix cf-af2 notebooks to work on TPU again #708
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| name: Test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| run-tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ '3.8', '3.9', '3.10' ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install poetry | |
| run: | | |
| curl -sSL https://install.python-poetry.org | python3 - --version 1.7.0 | |
| $HOME/.local/bin/poetry config virtualenvs.in-project true | |
| - uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: poetry-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
| - name: Install depencies | |
| run: $HOME/.local/bin/poetry install -E alphafold | |
| - name: Run tests | |
| run: .venv/bin/pytest | |
| - name: Run CLI | |
| run: | | |
| .venv/bin/colabfold_batch --help | |
| .venv/bin/colabfold_search --help | |
| .venv/bin/colabfold_split_msas --help | |