trying to save compute time by using previous prediction to model next prediction (e.g. now using Amber or making mutation)

[timlevine]

hope to use previous rank1 output pdf file (renamed equivalent to abcd.pdb) as Custom Template

Current Behavior

Steps to Reproduce (for bugs)

Please make sure to reproduce the issue after a "Factory Reset" in Colab.

Could not find this in the Runtime dropdown menu. Instead I did "Disconnect and delete Runtime". Issue unchanged.

If running locally ypdate you local installation colabfold_batch to the newest version.
Please provide your input if you can share it.

ColabFold Output (for bugs)

wtct.pdb(chemical/x-pdb) - 208575 bytes, last modified: n/a - 0% done

MessageError Traceback (most recent call last)
in <cell line: 51>()
55 custom_template_path = os.path.join(jobname,f"template")
56 os.makedirs(custom_template_path, exist_ok=True)
---> 57 uploaded = files.upload()
58 use_templates = True
59 for fn in uploaded.keys():

3 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105

MessageError: RangeError: Maximum call stack size exceeded.

Context

Providing context helps us come up with a solution and improve our documentation for the future.

Running T4 GPU session.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used : ???
• Operating system and version: Mac Ventura using Safari

I tried to attach the pdf file in question but it is not an allowed file type - so I added a further ".txt" suffix
wtct.pdb.txt

[milot-mirdita]

I think this was a Safari specific issue within Google Colaboratory where the upload box just won’t work.
I recommend using Firefox.