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Please make sure to reproduce the issue after a "Factory Reset" in Colab.
Could not find this in the Runtime dropdown menu. Instead I did "Disconnect and delete Runtime". Issue unchanged.
If running locally ypdate you local installation colabfold_batch to the newest version. Please provide your input if you can share it.
colabfold_batch
MessageError Traceback (most recent call last) in <cell line: 51>() 55 custom_template_path = os.path.join(jobname,f"template") 56 os.makedirs(custom_template_path, exist_ok=True) ---> 57 uploaded = files.upload() 58 use_templates = True 59 for fn in uploaded.keys():
3 frames /usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec) 101 ): 102 if 'error' in reply: --> 103 raise MessageError(reply['error']) 104 return reply.get('data', None) 105
MessageError: RangeError: Maximum call stack size exceeded.
Providing context helps us come up with a solution and improve our documentation for the future.
Running T4 GPU session.
Include as many relevant details about the environment you experienced the bug in.
I tried to attach the pdf file in question but it is not an allowed file type - so I added a further ".txt" suffix wtct.pdb.txt
The text was updated successfully, but these errors were encountered:
I think this was a Safari specific issue within Google Colaboratory where the upload box just won’t work. I recommend using Firefox.
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hope to use previous rank1 output pdf file (renamed equivalent to abcd.pdb) as Custom Template
Current Behavior
Steps to Reproduce (for bugs)
Please make sure to reproduce the issue after a "Factory Reset" in Colab.
Could not find this in the Runtime dropdown menu. Instead I did "Disconnect and delete Runtime". Issue unchanged.
If running locally ypdate you local installation
colabfold_batch
to the newest version.Please provide your input if you can share it.
ColabFold Output (for bugs)
wtct.pdb(chemical/x-pdb) - 208575 bytes, last modified: n/a - 0% done
MessageError Traceback (most recent call last)
in <cell line: 51>()
55 custom_template_path = os.path.join(jobname,f"template")
56 os.makedirs(custom_template_path, exist_ok=True)
---> 57 uploaded = files.upload()
58 use_templates = True
59 for fn in uploaded.keys():
3 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105
MessageError: RangeError: Maximum call stack size exceeded.
Context
Providing context helps us come up with a solution and improve our documentation for the future.
Running T4 GPU session.
Your Environment
Include as many relevant details about the environment you experienced the bug in.
I tried to attach the pdf file in question but it is not an allowed file type - so I added a further ".txt" suffix
wtct.pdb.txt
The text was updated successfully, but these errors were encountered: