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Update setup_databases.sh #514

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Update setup_databases.sh #514

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8 changes: 7 additions & 1 deletion setup_databases.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,11 @@ fi
downloadFile() {
URL="$1"
OUTPUT="$2"
# Check if the file already exists and is greater than 0 bytes (to avoid using partially downloaded files)
if [ -s "$OUTPUT" ]; then
echo "$OUTPUT exists and is not empty. Skipping download."
return 0
fi
set +e
for i in $STRATEGY; do
case "$i" in
Expand All @@ -46,6 +51,7 @@ downloadFile() {
fail "Could not download $URL to $OUTPUT"
}


# Make MMseqs2 merge the databases to avoid spamming the folder with files
export MMSEQS_FORCE_MERGE=1

Expand Down Expand Up @@ -98,4 +104,4 @@ if [ ! -f PDB_MMCIF_READY ]; then
rsync -rlpt -v -z --delete --port=${PDB_PORT} ${PDB_SERVER}/data/structures/divided/mmCIF/ pdb/divided
rsync -rlpt -v -z --delete --port=${PDB_PORT} ${PDB_SERVER}/data/structures/obsolete/mmCIF/ pdb/obsolete
touch PDB_MMCIF_READY
fi
fi