Pinned repositories

  1. indra

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

    Python 36 26

  2. rasmodel

    RAS Executable Model (REM)

    Python 1 7

  3. CancerBrowser

    HMS LINCS Cancer Browser

    JavaScript 1 3

  • Minerva Python Library

    Python 3 MIT Updated Aug 17, 2018
  • INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

    Python 36 26 BSD-2-Clause Updated Aug 17, 2018
  • Jupyter Notebook 6 Updated Aug 13, 2018
  • R 2 3 MIT Updated Aug 11, 2018
  • Python 2 MIT Updated Aug 9, 2018
  • General tools and scripts for cheminformatics analysis and processing

    Python 2 MIT Updated Aug 9, 2018
  • Resources for grounding biological entities from text and describing their hierarchical relationships.

    Python 7 17 Updated Aug 9, 2018
  • cycif.org GitHub Pages Website

    JavaScript 3 Updated Aug 8, 2018
  • Minerva Javascript client library

    JavaScript 1 MIT Updated Aug 8, 2018
  • Minerva Infrastructure

    Python 1 MIT Updated Aug 8, 2018
  • Minerva database components

    Python 1 MIT Updated Aug 8, 2018
  • ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 4 MIT Updated Aug 4, 2018
  • Jupyter Notebook for plotting single-cell data from Lin et al. 2018

    Jupyter Notebook 1 2 MIT Updated Aug 2, 2018
  • Biological reasoning agents

    Python 1 14 BSD-2-Clause Updated Jul 28, 2018
  • JavaScript 3 BSD-2-Clause Updated Jul 25, 2018
  • pathwaymap.indra.bio website

    JavaScript BSD-2-Clause Updated Jul 24, 2018
  • Deployment of lmod modules and underpinning software on O2

    Lua 1 MIT Updated Jul 24, 2018
  • Minimal Docker image based on Alpine Linux

    Dockerfile 1 MIT Updated Jul 24, 2018
  • Bio-Formats Directory Scanner

    Java MIT Updated Jul 23, 2018
  • Matlab Updated Jul 20, 2018
  • Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

    Matlab 1 1 MIT Updated Jul 20, 2018
  • JavaScript 1 Updated Jul 11, 2018
  • Data processing and analysis for cardiomyocytes treated with TKIs

    Matlab Updated Jul 10, 2018
  • Python 1 Updated Jun 14, 2018
  • Python Updated May 11, 2018
  • Repository for OMERO related scripts

    Python 1 3 AGPL-3.0 Updated May 9, 2018
  • BioFormats Tools Docker Image

    MIT Updated Apr 25, 2018
  • Docker build for benchmarking ASHLAR for AWS Batch

    Python 1 MIT Updated Apr 17, 2018
  • Source code for the article "Encoding growth factor identity in the temporal dynamics of a transcription factor under combinatorial regulation" by Sampattavanich et al.

    Matlab MIT Updated Mar 16, 2018
  • Python 1 Updated Feb 2, 2018