Resolve sourmash gather --help issue (#3032)

This PR escapes `%` characters in the usage string for sourmash gather, which was causing a ValueError when invoked on the command line with `sourmash gather --help`. Fixes #3031 --------- Co-authored-by: C. Titus Brown <titus@idyll.org>
sourmash-bio · Feb 24, 2024 · 874de99 · 874de99
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diff --git a/pyproject.toml b/pyproject.toml
@@ -34,6 +34,7 @@ authors = [
   { name="Katrin Leinweber", orcid="0000-0001-5135-5758" },
   { name="Marisa Lim", orcid="0000-0003-2097-8818" },
   { name="Ricky Lim", orcid="0000-0003-1313-7076" },
+  { name="Bradley Nelson", orcid="0009-0001-1553-932X" },
   { name="Ivan Ogasawara", orcid="0000-0001-5049-4289" },
   { name="Taylor Reiter", orcid="0000-0002-7388-421X" },
   { name="Camille Scott", orcid="0000-0001-8822-8779" },

diff --git a/src/sourmash/cli/gather.py b/src/sourmash/cli/gather.py
@@ -39,10 +39,10 @@
 ```
 overlap     p_query p_match avg_abund
 ---------   ------- ------- ---------
-9.3 Mbp        0.8%   97.5%       6.7    NC_007951.1 Burkholderia xenovorans ...
-7.3 Mbp        2.3%   99.9%      23.9    NC_003272.1 Nostoc sp. PCC 7120 DNA,...
-7.0 Mbp        8.9%  100.0%      94.5    BX119912.1 Rhodopirellula baltica SH...
-6.6 Mbp        1.4%  100.0%      16.3    NC_009972.1 Herpetosiphon aurantiacu...
+9.3 Mbp        0.8%%   97.5%%       6.7    NC_007951.1 Burkholderia xenovorans ...
+7.3 Mbp        2.3%%   99.9%%      23.9    NC_003272.1 Nostoc sp. PCC 7120 DNA,...
+7.0 Mbp        8.9%%  100.0%%      94.5    BX119912.1 Rhodopirellula baltica SH...
+6.6 Mbp        1.4%%  100.0%%      16.3    NC_009972.1 Herpetosiphon aurantiacu...
 ...
 ```