Create entry point for starfish/experiment/builder/cli.py

[ttung]

1. Create a "main" method for the script.
2. Add an entry point for the pip package.

Test plan:

% pip install -e .
% build_sample_experiment --help

Connects to #418

[codecov-io]

Codecov Report

Merging #436 into master will increase coverage by 0.65%.
The diff coverage is 94.73%.

@@            Coverage Diff             @@
##           master     #436      +/-   ##
==========================================
+ Coverage   84.73%   85.39%   +0.65%     
==========================================
  Files          72       72              
  Lines        2765     2773       +8     
==========================================
+ Hits         2343     2368      +25     
+ Misses        422      405      -17

Impacted Files	Coverage Δ
starfish/starfish.py	82.69% <100%> (+1.05%)	⬆️
starfish/experiment/builder/cli.py	78.57% <93.75%> (+78.57%)	⬆️

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[joshmoore]

I think b_s_e would surprise me if it showed up on $PATH after pip install starfish

[ambrosejcarr]

Yep, I had similar thoughts. I think it might make more sense to include it as a sub-module of starfish. For now, tagging it with a name that associates with our package is enough for me because I want to get this out to collaborators.

Suggestion:
build_sample_starfish_experiment + new issue to include it in the starfish binary.

[ttung]

Made this a subcommand of the starfish cli. Example invocation: starfish build --fov-count 2 --hybridization-dimensions '{"c": 2, "h": 2, "z": 3}' /tmp/foo

[ambrosejcarr]

Lol, love that as a side effect of this change, it also displays the starfish ascii art.

[ttung]

Lol, love that as a side effect of this change, it also displays the starfish ascii art.

The most important change. That the tool is wired up is the side effect. :)

[dganguli]

LOL

…

On Fri, Aug 17, 2018 at 1:12 PM Tony Tung ***@***.***> wrote: Lol, love that as a side effect of this change, it also displays the starfish ascii art. The most important change. That the tool is wired up is the side effect. :) — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#436 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AClETAGF6wj0mfQC65JwIqiUPa9O2GpCks5uRyPLgaJpZM4V_WkH> .