bug fixes #1

lee218llnl · 2014-01-22T01:18:12Z

No description provided.

tgamblin · 2014-01-23T09:09:19Z

I changed the commit to make prefix a string rather than having to call str() on it everywhere.

tgamblin · 2014-01-23T09:17:34Z

I also modified the exception to be a SpackError instead of exception.

- Make prefix an actual string so that install doesn't fail. - Executable should throw SpackError on command failure.

bug fixes from Greg Lee

doc : minor typos fixed

Add recursion and force-overwrite to create-tarball.

adding lmod in the ignore list

PEP8 Goodness

Plumed

Update from spack repo

@rpath

commit 4ef502d Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 18:41:52 2017 -0500 autopep8 commit 80ccb59 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 15:55:06 2017 -0500 Make installtarball and createtarball a multi level command spack buildcache create spack buildcache install ala spack pgp commit 2109078 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 14:25:12 2017 -0500 does spack really hate dashes in command names??? commit 589f119 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 13:36:34 2017 -0500 autopep8 commit 52b614c Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 13:34:55 2017 -0500 unknown command error caused by import of relocate.py failing commit 30aa688 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 13:14:22 2017 -0500 spack does not seem to like dashes or underscores in the command names commit e06576f Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 12:36:06 2017 -0500 don't need symbolic links commit 7a269f8 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 12:32:52 2017 -0500 use filter_file instead of os.system('sed....') commit 7f6c669 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 12:21:06 2017 -0500 replace use of getstatusoutput() with which(command) followed by command() commit beb878d Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 23 11:51:51 2017 -0500 fix the error from spack help -a commit 99ed0cc Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 22 23:21:02 2017 -0500 remove outdated packaging.py commit 1961e68 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 22 23:04:13 2017 -0500 Extract the signature files and the tarball in stage directory. commit 7d64020 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 22 22:33:02 2017 -0500 update binary_cache doc commit d8e2d17 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 22 22:28:36 2017 -0500 Expand on Ben Boeckel's use of python tarfile commit 78e0eb5 Author: Ben Boeckel <ben.boeckel@kitware.com> Date: Mon May 22 15:10:00 2017 -0400 WIP: binary_distribution: pseudocode for GPG-signed binaries commit 01f3887 Merge: eaff47b 8ab8459 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 22 10:12:06 2017 -0500 Merge branch 'develop' into binary_packages commit eaff47b Author: Patrick Gartung <gartung@fnal.gov> Date: Wed May 17 13:37:15 2017 -0500 more fixes from testing commit 2093e57 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed May 17 12:38:46 2017 -0500 remove error for create_tarball and install_tarball when spack is run with no arguments commit 847ba89 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 16 21:28:42 2017 -0500 add to description commit bb117f6 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 16 21:21:38 2017 -0500 fixes from testing commit 1222851 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri May 12 18:19:34 2017 -0500 autopep8 commit a1d05c0 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri May 12 17:56:34 2017 -0500 move the installation of binary tarballs to its own command commit 9552235 Merge: 9a4bccf f147c9f Author: Patrick Gartung <gartung@fnal.gov> Date: Fri May 12 17:10:43 2017 -0500 Merge branch 'develop' into binary_packages commit 9a4bccf Author: Patrick Gartung <gartung@fnal.gov> Date: Fri May 12 17:10:37 2017 -0500 move fetch_binary actions out of install method commit 8830cfc Merge: b2019a6 e78e87f Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Apr 28 10:52:30 2017 -0500 Merge remote-tracking branch 'llnl/develop' into binary_packages commit b2019a6 Merge: 9412ee1 52a9e5d Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Mar 15 14:30:31 2017 -0500 Merge tag 'v0.10.0' into binary_packages commit 52a9e5d Merge: 4f8167b 1856317 Author: Todd Gamblin <tgamblin@llnl.gov> Date: Tue Jan 17 01:36:03 2017 -0800 Merge branch 'releases/v0.10.0' commit 9412ee1 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Dec 16 14:28:22 2016 -0600 add binary_caches to index.rst??? commit c881b54 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Dec 16 13:52:04 2016 -0600 no leading spaces??? commit 9cd1543 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Dec 16 13:43:38 2016 -0600 no spaces in docstring??? commit d9fedc4 Merge: a7c0408 87c9b01 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Dec 16 12:45:30 2016 -0600 Merge remote-tracking branch 'llnl/develop' into binary_packages commit a7c0408 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Dec 14 11:54:19 2016 -0600 more test fixups commit 9d94d24 Merge: 95e8b91 2245c00 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon Dec 5 12:53:29 2016 -0600 Merge remote-tracking branch 'my/binary_packages' into binary_packages commit 95e8b91 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon Dec 5 12:51:53 2016 -0600 apple-clang does have cxx14 support commit 2245c00 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Nov 16 15:13:40 2016 -0600 more format fixes commit e15a3f0 Merge: 6000d15 41722b8 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Nov 16 15:02:07 2016 -0600 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages commit 41722b8 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Nov 16 13:16:31 2016 -0600 more nit picking commit 6000d15 Merge: 53b15b5 ac68a2d Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Nov 16 10:20:22 2016 -0600 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages commit ac68a2d Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 14:56:31 2016 -0600 this is really needed for the test commit 1d475a7 Merge: e18fddd 2fcac22 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 14:23:31 2016 -0600 Merge remote-tracking branch 'llnl/develop' into binary_packages commit e18fddd Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 14:18:29 2016 -0600 now avaliable in upstream commit aa378db Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 14:16:32 2016 -0600 use upstream sqlite commit 47f5133 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 14:10:59 2016 -0600 sigh commit b0206ba Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 13:59:51 2016 -0600 fix errors travis found commit 6f47aa2 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 12:08:34 2016 -0600 this is the correct path to use commit 7da99bb Merge: 6e99a79 9eb6e1a Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 11:08:12 2016 -0600 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages commit 9eb6e1a Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 10:38:54 2016 -0600 this got removed in merge commit 6e99a79 Merge: 42a2553 fa01377 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Nov 15 09:26:48 2016 -0600 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages commit fa01377 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Nov 11 12:50:57 2016 -0600 pass fetch_binary with the new api commit 8576e76 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Nov 11 11:07:45 2016 -0600 missed commit bf7f1e0 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Nov 10 16:50:32 2016 -0600 changes needed after merging commit bf3b163 Merge: 04dc337 1eeef97 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Nov 3 13:58:59 2016 -0500 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit 53b15b5 Merge: cfee296 42a2553 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Sep 30 12:08:07 2016 -0500 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages commit 42a2553 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Sep 30 12:07:44 2016 -0500 add sqlite 3.12.2 commit cfee296 Merge: 772668e 04dc337 Author: Patrick Gartung <gartung@fnal.gov> Date: Fri Sep 30 11:24:49 2016 -0500 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages commit 04dc337 Merge: dc5cf9f 6df84a7 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Sep 28 11:15:47 2016 -0500 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit 772668e Merge: 6f7bcd2 dc5cf9f Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Sep 27 16:07:44 2016 -0500 Merge branch 'binary_packages' of github.com:gartung/spack into binary_packages Conflicts: lib/spack/spack/test/__init__.py commit dc5cf9f Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Sep 22 21:11:42 2016 -0500 new opsnssl version commit 1cf9e76 Merge: 5f2243a cb74a9b Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Sep 22 14:40:33 2016 -0500 Merge remote-tracking branch 'my/binary_packages' into binary_packages commit 5f2243a Merge: 29e4233 a638b62 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Sep 22 14:37:08 2016 -0500 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit cb74a9b Merge: 22b0e4b 7ad6c35 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Sep 22 11:10:28 2016 -0500 Merge remote-tracking branch 'llnl/develop' into binary_packages commit 29e4233 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Aug 30 12:38:19 2016 -0500 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit 1d73ce4 Merge: 22b0e4b abd1546 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Aug 30 12:37:20 2016 -0500 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit 4f8167b Author: Todd Gamblin <tgamblin@llnl.gov> Date: Mon Aug 15 10:49:09 2016 -0700 Don't assume spack is in the path when building docs. commit 22b0e4b Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Aug 11 15:06:43 2016 -0500 install-policy -> fetch-binary commit 9ce4863 Merge: 90bbdca d380d16 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue Aug 9 16:26:11 2016 -0500 Merge remote-tracking branch 'llnl/develop' into binary_packages commit 90bbdca Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Aug 4 10:25:12 2016 -0500 Loop over all mirrors trying to find binary tarball commit e9bc73c Merge: 436d734 14d861a Author: Patrick Gartung <gartung@fnal.gov> Date: Mon Aug 1 16:37:41 2016 -0500 Merge branch 'develop' of https://github.com/LLNL/spack into llnl-develop commit 436d734 Merge: b892ceb 7446f7c Author: Patrick Gartung <gartung@fnal.gov> Date: Mon Aug 1 16:32:28 2016 -0500 Merge branch 'binary_packages' into llnl-develop commit 7446f7c Merge: 8c32777 0e422de Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Jun 30 09:41:39 2016 -0500 Merge remote-tracking branch 'llnl/develop' into binary_packages commit 6f7bcd2 Merge: 20953d7 0185226 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon Jun 27 09:32:14 2016 -0500 Merge remote-tracking branch 'origin/develop' into binary_packages Conflicts: lib/spack/spack/test/__init__.py commit 8c32777 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Jun 23 16:30:25 2016 -0500 only create tarball if it does not exist commit c67e4a7 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Jun 23 16:27:17 2016 -0500 only create tarball if it does not exist commit b26f811 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Jun 23 16:17:46 2016 -0500 do not fail if tarball exists commit 20953d7 Author: Patrick Gartung <gartung@fnal.gov> Date: Thu Jun 23 08:39:54 2016 -0500 these were removed during merge commit f42ff74 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Jun 22 16:17:34 2016 -0500 even more merge fixups commit f2bd84e Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Jun 22 16:13:46 2016 -0500 more merge fixups commit a8e2230 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Jun 22 14:53:19 2016 -0500 fixup merge commit acaff17 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Jun 22 14:42:46 2016 -0500 fix typo from merge commit 1602d70 Merge: 4033646 005827a Author: Patrick Gartung <gartung@fnal.gov> Date: Wed Jun 22 14:38:48 2016 -0500 Merge branch 'llnl-develop' into binary_packages Conflicts: lib/spack/spack/cmd/install.py lib/spack/spack/package.py lib/spack/spack/test/__init__.py commit 4033646 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 23 13:04:04 2016 -0500 typo commit a285488 Author: Patrick Gartung <gartung@fnal.gov> Date: Mon May 23 12:39:22 2016 -0500 fix incorrect change commit 4d3a7dc Author: Patrick Gartung <gartung@fnal.gov> Date: Thu May 19 13:39:55 2016 -0500 fix bug that kept LC_LOAD_DYLIB from being changed commit b48047e Author: Patrick Gartung <gartung@fnal.gov> Date: Wed May 18 18:39:56 2016 -0500 revert change to cc script commit 987c549 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed May 18 18:30:04 2016 -0500 using @rpath was a bust; switched replacing olddir with newdir; add option to Darwin ld to pad rpath entries as much as possible for long relocation paths: commit 164da8e Author: Todd Gamblin <tgamblin@llnl.gov> Date: Wed May 18 08:30:13 2016 -0700 Version bump to 0.9.1 - Bugfixes for spack find - 0.9.1 can read specs from current develop. commit 6e1257e Author: alalazo <massimiliano.culpo@googlemail.com> Date: Wed May 18 11:48:03 2016 +0200 fixes spack#967 commit 5f85533 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 17 18:29:51 2016 -0500 fixes commit a3783c1 Author: Patrick Gartung <gartung@fnal.gov> Date: Tue May 17 17:22:29 2016 -0500 use only otool and install_name_tool commit 0607152 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Tue May 17 15:43:43 2016 +0200 various fixes commit 66a812d Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sun May 15 20:40:09 2016 +0200 pep8 commit f9cd9a2 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sun May 15 20:23:07 2016 +0200 refactoring; documentation; testing commit 4282850 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Thu May 12 12:06:35 2016 +0200 code cleanup commit ebd7fe9 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Thu May 12 12:01:09 2016 +0200 clean up mac relocation commit a506bf9 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed May 11 15:22:34 2016 -0500 making this work on OSX commit 132993d Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Thu May 12 11:47:26 2016 +0200 fix compression flag commit a476bd7 Author: Patrick Gartung <gartung@fnal.gov> Date: Wed May 11 11:50:20 2016 -0500 quote pathnames in case there are spaces commit 1f9a01d Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Thu May 12 11:30:45 2016 +0200 address flake8 checks commit 779b8dc Merge: 5911b0b e7ced54 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Thu May 12 11:02:37 2016 +0200 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit 5911b0b Author: Benedikt Hegner <hegner@cern.ch> Date: Mon May 9 21:50:41 2016 +0200 fix wrong ident commit bfa5f2c Author: Benedikt Hegner <hegner@cern.ch> Date: Mon May 9 21:48:16 2016 +0200 refine relocation commit 6bad462 Author: Benedikt Hegner <hegner@cern.ch> Date: Mon May 9 19:38:01 2016 +0200 reduce verbosity commit 80dbd10 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sun May 8 12:05:57 2016 +0200 add relocation for shebang and config files commit 8446096 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sun May 8 11:10:18 2016 +0200 remove duplicated fetch; remnant from last merge which lead to duplication of some code commit 5fb14db Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sat May 7 16:30:36 2016 +0200 use full version of linux distribution commit 3210dd2 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sat May 7 13:16:51 2016 +0200 use mirrors for downloading binary tarballs commit 8324fcf Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sat May 7 10:50:00 2016 +0200 remove duplicate creation of install layout commit 4c8c82a Merge: e7773ce 407920e Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sat May 7 10:42:31 2016 +0200 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit e7773ce Author: Benedikt Hegner <hegner@cern.ch> Date: Sat Feb 20 15:32:44 2016 +0100 remove accidentally added files commit 4498737 Author: Benedikt Hegner <benedikt.hegner@cern.ch> Date: Sat Feb 20 15:29:00 2016 +0100 Extend binary packaging features o Add lazy policy for install o Use Stage class for download o Add meta-data o Improve logging commit 7719192 Merge: 95fe15a 860e5df Author: hegner <benedikt.hegner@cern.ch> Date: Fri Feb 19 23:52:17 2016 +0100 Merge pull request #2 from brettviren/features/binary-packages Fix dependency recursion. commit 860e5df Author: Brett Viren <bv@bnl.gov> Date: Fri Feb 19 17:44:41 2016 -0500 Fix dependency recursion. commit 95fe15a Merge: 2ef4768 90fcba0 Author: hegner <benedikt.hegner@cern.ch> Date: Fri Feb 19 23:30:56 2016 +0100 Merge pull request #1 from brettviren/features/binary-packages Add recursion and force-overwrite to create-tarball. commit 90fcba0 Author: Brett Viren <bv@bnl.gov> Date: Fri Feb 19 16:25:02 2016 -0500 Add recursion and force-overwrite to create-tarball. commit 2ef4768 Merge: d31ba16 d8a7016 Author: Benedikt Hegner <hegner@cern.ch> Date: Thu Feb 18 22:11:50 2016 +0100 Merge branch 'develop' of https://github.com/LLNL/spack into binary_packages commit d31ba16 Author: Benedikt Hegner <hegner@cern.ch> Date: Thu Feb 18 22:09:25 2016 +0100 add version to tarball name commit c053647 Author: Benedikt Hegner <hegner@cern.ch> Date: Wed Feb 17 06:56:19 2016 +0100 remove debug printout commit 9c67751 Author: Benedikt Hegner <hegner@cern.ch> Date: Wed Feb 17 06:55:03 2016 +0100 first test version of binary install procedures commit 84de4be Author: Benedikt Hegner <hegner@cern.ch> Date: Wed Feb 17 03:49:07 2016 +0100 move to non-CERN specific naming conventions commit e67b7eb Author: Benedikt Hegner <hegner@cern.ch> Date: Wed Feb 17 02:23:32 2016 +0100 add create_tarball command to package build artifacts into tarballs

python variant, missing swig dep

Develop chain update

update miniconda3 package.py

Whenever attempting to use any ncurses functionality within cscope, a page fault would result within the ncurses library. Program received signal SIGSEGV, Segmentation fault. 0x00007ffff7fad3cf in termattrs_sp () from .../lib/libncursesw.so.6 (gdb) bt #0 0x00007ffff7fad3cf in termattrs_sp () from .../lib/libncursesw.so.6 #1 0x00007ffff7faa794 in _nc_setupscreen_sp () from .../lib/libncursesw.so.6 #2 0x00007ffff7fa614c in newterm_sp () from .../lib/libncursesw.so.6 #3 0x00007ffff7fa65b9 in newterm () from .../lib/libncursesw.so.6 #4 0x00007ffff7fa2970 in initscr () from .../lib/libncursesw.so.6 #5 0x0000000000403dc2 in main (argc=<optimized out>, argv=0x7fffffffcea8) at main.c:574 This is due to a conflict between libtinfo.so and libtinfow.so. Both are linked into cscope: $ ldd $(which cscope) /bin/bash: .../lib/libtinfo.so.6: no version information available (required by /bin/bash) linux-vdso.so.1 (0x00007fff5dbcb000) libncursesw.so.6 => .../lib/libncursesw.so.6 (0x00007f435cc69000) libtinfo.so.6 => .../lib/libtinfo.so.6 (0x00007f435cc2c000) libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f435ca29000) libtinfow.so.6 => .../lib/libtinfow.so.6 (0x00007f435c9e8000) /lib64/ld-linux-x86-64.so.2 (0x00007f435cca7000) Specifically linking libtinfow.so instead of libtinfo.so resolves the issue. All instances of '...' above represent the path to the installed ncurses for Spack.

spack fixes

The r-devtools package was not installable due to a few issues. - The rstudioapi spec was for 0.11.0 but the rstudioapi version is actually 0.11. This caused an error during concretization. - Set r-usethis to depend on rlang@0.4.3: rather than r-lang@0.4.3. - Set r-usethis to depend on r-gh@1.1.0: rather than r-gh@1.1.0. - Added version r-gh-1.1.0 as it is not currently present in spack.

…ilers refers #1 Working with a single type per attribute makes the JSON file easier to parse and work with (in particular for statically typed languages). To this end the compilers attribute has been simplified to only accept arrays of objects.

Before: ``` $ hyperfine '~/spack/bin/spack -e . build-env rocfft' Benchmark #1: ~/spack/bin/spack -e . build-env rocfft Time (mean ± σ): 1.593 s ± 0.016 s [User: 1.468 s, System: 0.126 s] Range (min … max): 1.575 s … 1.628 s 10 runs ``` After: ``` $ hyperfine '~/spack/bin/spack -e . build-env rocfft' Benchmark #1: ~/spack/bin/spack -e . build-env rocfft Time (mean ± σ): 1.407 s ± 0.020 s [User: 1.280 s, System: 0.127 s] Range (min … max): 1.393 s … 1.455 s 10 runs ```

Git 2.24 introduced a feature flag for repositories with many files, see: https://github.blog/2019-11-03-highlights-from-git-2-24/#feature-macros Since Spack's Git repository contains roughly 8,500 files, it can be worthwhile to enable this, especially on slow file systems such as NFS: ``` $ hyperfine --warmup 3 'cd spack-default; git status' 'cd spack-manyfiles; git status' Benchmark #1: cd spack-default; git status Time (mean ± σ): 3.388 s ± 0.095 s [User: 256.2 ms, System: 625.8 ms] Range (min … max): 3.168 s … 3.535 s 10 runs Benchmark #2: cd spack-manyfiles; git status Time (mean ± σ): 168.7 ms ± 10.9 ms [User: 98.6 ms, System: 126.1 ms] Range (min … max): 144.8 ms … 188.0 ms 19 runs Summary 'cd spack-manyfiles; git status' ran 20.09 ± 1.42 times faster than 'cd spack-default; git status' ```

…ions/cache-v2.1.5 build(deps): bump actions/cache from v2.1.4 to v2.1.5

Enable option to build Albany within E3SM fork of spack

Fix remaining met format errors

@omsai

1. support version 3.1.3, which now depends on sundials@6 2. support version 3.1.2:, which broke the two patch files and therefore the two patch files have been replaced by more flexible filter_file() commands inside a patch() function. 3. rename the variant for python extension from using the package name "+pyuqtk" to the more standard "+python" 4. add maintainers @omsai and the upstream developer @bjdebus who offered to help with the spack packaging. 5. swig should only be a build-time dependency. swig is only necessary until @:3.1.0 6. confirmed python dependencies are correct by inspecting imports, subset python dependencies type to build, run, and confirmed all 31 build-time tests pass including the 9 python tests: ```console $ spack env create uqtk-dev $ spack add uqtk@3.1.3 $ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt ==> Testing package uqtk-3.1.3-nok6fut ==> [2023-04-19-14:56:25.005361] Running build-time tests ==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check] ==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test' ==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test' Running tests... /home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut Start 1: ArrayReadAndWrite Start 2: ArrayDelColumn Start 3: Array1DMiscTest Start 4: Array2DMiscTest 1/31 Test #1: ArrayReadAndWrite ................ Passed 0.01 sec Start 5: ArraySortTest 2/31 Test #2: ArrayDelColumn ................... Passed 0.01 sec Start 6: MultiIndexTest 3/31 Test #3: Array1DMiscTest .................. Passed 0.01 sec Start 7: CorrTest 4/31 Test #4: Array2DMiscTest .................. Passed 0.01 sec Start 8: QuadLUTest 5/31 Test #5: ArraySortTest .................... Passed 0.02 sec Start 9: MCMC2dTest 6/31 Test #6: MultiIndexTest ................... Passed 0.01 sec Start 10: MCMCRandomTest 7/31 Test #8: QuadLUTest ....................... Passed 0.02 sec Start 11: MCMCNestedTest 8/31 Test #10: MCMCRandomTest ................... Passed 0.02 sec Start 12: Deriv1dTest 9/31 Test #12: Deriv1dTest ...................... Passed 0.01 sec Start 13: SecondDeriv1dTest 10/31 Test #13: SecondDeriv1dTest ................ Passed 0.01 sec Start 14: GradHessianTest 11/31 Test #11: MCMCNestedTest ................... Passed 0.03 sec Start 15: GradientPCETest 12/31 Test #14: GradHessianTest .................. Passed 0.01 sec Start 16: PCE1dTest 13/31 Test #15: GradientPCETest .................. Passed 0.01 sec Start 17: PCEImplTest 14/31 Test #16: PCE1dTest ........................ Passed 0.01 sec Start 18: PCELogTest 15/31 Test #18: PCELogTest ....................... Passed 0.01 sec Start 19: Hessian2dTest 16/31 Test #19: Hessian2dTest .................... Passed 0.01 sec Start 20: BCS1dTest 17/31 Test #20: BCS1dTest ........................ Passed 0.01 sec Start 21: BCS2dTest 18/31 Test #21: BCS2dTest ........................ Passed 0.01 sec Start 22: LowRankRegrTest 19/31 Test #22: LowRankRegrTest .................. Passed 0.01 sec Start 23: PyModTest 20/31 Test #17: PCEImplTest ...................... Passed 0.07 sec Start 24: PyArrayTest 21/31 Test #23: PyModTest ........................ Passed 0.08 sec Start 25: PyArrayTest2 22/31 Test #25: PyArrayTest2 ..................... Passed 0.30 sec Start 26: PyQuadTest 23/31 Test #24: PyArrayTest ...................... Passed 1.44 sec Start 27: PyBCSTest1D 24/31 Test #26: PyQuadTest ....................... Passed 1.68 sec Start 28: PyBCSTest2D 25/31 Test #27: PyBCSTest1D ...................... Passed 1.66 sec Start 29: PyBADPTest 26/31 Test #7: CorrTest ......................... Passed 3.43 sec Start 30: PyRegressionTest 27/31 Test #28: PyBCSTest2D ...................... Passed 1.50 sec Start 31: PyGalerkinTest 28/31 Test #9: MCMC2dTest ....................... Passed 3.90 sec 29/31 Test #29: PyBADPTest ....................... Passed 1.66 sec 30/31 Test #30: PyRegressionTest ................. Passed 1.72 sec 31/31 Test #31: PyGalerkinTest ................... Passed 1.63 sec 100% tests passed, 0 tests failed out of 31 Total Test time (real) = 5.35 sec ==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check' ==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile ```

lz4: fix bug on darwin, use makefile by default (spack#36820)

bug fixes

b4da28f

- Make prefix an actual string so that install doesn't fail. - Executable should throw SpackError on command failure.

tgamblin added a commit that referenced this pull request Jan 23, 2014

Merge pull request #1 from scalability-llnl/20140121_bug_fixes

aaf16a3

bug fixes from Greg Lee

tgamblin merged commit aaf16a3 into master Jan 23, 2014

tgamblin deleted the 20140121_bug_fixes branch January 23, 2014 09:31

tgamblin mentioned this pull request Jan 7, 2016

Spack should be more aggressive about reusing installed software #311

Closed

alalazo referenced this pull request in epfl-scitas/spack Feb 15, 2016

Merge pull request #1 from alalazo/features/external-packages

d4a771a

doc : minor typos fixed

brettviren pushed a commit to brettviren/spack that referenced this pull request Feb 23, 2016

Merge pull request spack#1 from brettviren/features/binary-packages

95fe15a

Add recursion and force-overwrite to create-tarball.

citibeth mentioned this pull request Mar 17, 2016

git should install a stable version by default, not a release candidate #564

Closed

AaronTHolt pushed a commit to AaronTHolt/spack that referenced this pull request Mar 30, 2016

Merge pull request spack#1 from nrichart/feature/lmod

6311a34

adding lmod in the ignore list

adamjstewart mentioned this pull request Jul 25, 2016

Add package for ack #1366

Merged

becker33 pushed a commit that referenced this pull request Aug 1, 2016

Merge pull request #1 from robertdfrench/olcf/unified_cray_platform

07f2dd5

PEP8 Goodness

tgamblin pushed a commit that referenced this pull request Aug 25, 2016

Merge pull request #1 from ARCCA/plumed

4b354cb

Plumed

jgalarowicz mentioned this pull request Sep 1, 2016

spack compiler wrappers munging include file lines when building cbtf-krell #1434

Closed

skosukhin pushed a commit to skosukhin/spack that referenced this pull request Dec 1, 2016

Merge pull request spack#1 from LLNL/develop

7bf0d83

Update from spack repo

hartzell mentioned this pull request Dec 12, 2016

impossible python tk variant #2565

Closed

jgalarowicz mentioned this pull request Jun 21, 2017

libmng fails to build on rzmanta (power 8) when trying to build the default qt qt5 package or in the case below where I tried to build qt@4.8.6. #4571

Closed

bd4 pushed a commit to bd4/spack that referenced this pull request Jul 20, 2017

Merge pull request spack#1 from bd4/swift-develop

3a167c4

python variant, missing swig dep

wrk21 mentioned this pull request Jul 21, 2017

Packages hypre not compiling, C compiler cannot create executables #4842

Closed

jgalarowicz mentioned this pull request Aug 3, 2017

Add package for libbsd, add variant to expat for libbsd #4945

Merged

jgalarowicz mentioned this pull request Aug 16, 2017

ppc64le: spack install xextproto fails due to old config.guess and config.sub files #5128

Closed

jgalarowicz mentioned this pull request Nov 28, 2017

"spack compilers" abort - fedora26 gcc-7.2.1-2 compiler present #6200

Closed

wrk21 mentioned this pull request Dec 12, 2017

install fftw@2.1.5 error #6660

Open

adamryczkowski mentioned this pull request Apr 21, 2018

julia 0.6.2 fails to build on Ubuntu 16.04 #7857

Closed

MattWeatherford mentioned this pull request Jun 19, 2018

Cant install glib 2.56.0 throws error on CentOS 6, #8515

Closed

gartung referenced this pull request in gartung/spack Jun 21, 2018

Merge pull request #1 from gartung/develop-chain-update

02c2218

Develop chain update

Saremox mentioned this pull request Aug 13, 2018

Python 3.7 #8968

Closed

floquet mentioned this pull request Oct 12, 2018

Update with latest releases from PMIX #9512

Closed

oracleLee added a commit that referenced this pull request Jun 8, 2020

Merge pull request #1 from oracleLee/Add-miniconda3@4.8.2

ba762b8

update miniconda3 package.py

haampie referenced this pull request in haampie/spack Aug 7, 2020

Merge pull request #1 from haampie/pull_17422-2

1fd30e9

spack fixes

glennpj mentioned this pull request Sep 26, 2020

Fix r-devtools package #18981

Merged

frankwillmore mentioned this pull request Dec 22, 2020

add intel-oneapi packages #20411

Merged

bernhardkaindl pushed a commit to bernhardkaindl/spack that referenced this pull request Nov 2, 2021

Merge pull request spack#1 from thelfer/dependabot/github_actions/act…

0a73bf6

…ions/cache-v2.1.5 build(deps): bump actions/cache from v2.1.4 to v2.1.5

lrknox mentioned this pull request Jan 14, 2022

Installation issue: silo #28415

Closed

4 tasks

RikkiButler20 mentioned this pull request Feb 1, 2022

Bugfix/Heffte stand alone test #28622

Closed

xylar added a commit to xylar/spack that referenced this pull request Mar 18, 2022

Merge pull request spack#1 from E3SM-Project/albany

ff41ab6

Enable option to build Albany within E3SM fork of spack

tldahlgren mentioned this pull request Apr 8, 2022

expat: Deprecate 2.4.6 #29973

Merged

x2v0 mentioned this pull request Apr 29, 2022

spack under wsl #30394

Open

3 tasks

honghh2018 mentioned this pull request Jun 14, 2022

spack install poppler display error #31125

Open

3 tasks

tldahlgren mentioned this pull request Jun 22, 2022

Environments: Add support for include URLs #29026

Merged

4 tasks

x2v0 mentioned this pull request Jun 23, 2022

Error: PermissionError: [Errno 1] Operation not permitte #31256

Open

4 tasks

AlexanderRichert-NOAA referenced this pull request in AlexanderRichert-NOAA/spack Jan 4, 2023

Merge pull request #1 from climbfuji/bugfix/hang-format

bbc2647

Fix remaining met format errors

accopeland mentioned this pull request Apr 12, 2023

spack find error 'Cannot depend on incompatible specs' #36810

Closed

3 tasks

kf-cuanschutz mentioned this pull request May 5, 2023

configure:19043: error: Enforced use of libbsd cannot be satisfied.Installation issue: #37469

Open

4 tasks

DavidHuber-NOAA pushed a commit to DavidHuber-NOAA/spack that referenced this pull request Jun 24, 2023

Merge pull request spack#1 from climbfuji/bugfix/lz4_fork_merge_mar2023

b408815

lz4: fix bug on darwin, use makefile by default (spack#36820)

bernhardkaindl mentioned this pull request Mar 19, 2024

py-pycm: add new package with version 4.0 #43251

Merged

AcriusWinter mentioned this pull request Jun 5, 2024

Rename build-time test methods #44572

Merged

6 tasks

SQLimit mentioned this pull request Jun 9, 2024

Installation issue: cp2k@2023.1 #44636

Closed

4 tasks

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