SPM.jl is a Julia package alongside
the SPM software, designed
for the analysis of brain imaging data sequences.
SPM.jl is available for Julia v1.6 and later releases. It can be installed
with Julia built-in package
manager. In a Julia session, after
entering the package manager mode with ], run the command
pkg> update
pkg> add https://github.com/spm/SPM.jlTo exit from the Pkg REPL mode press the backspace key, or Ctrl + C.
SPM.jl also requires a shared library libSPM (see
SPM Makefile).
A compiled library libSPM.so is provided for 64-bit Linux environments.
Example of between modality coregistration using information theory (see spm_coreg.m).
If needed, you can download test data here.
julia> using SPM
julia> P1 = "./T1w.nii";
julia> P2 = "./bold.nii";
julia> x,o = SPM.Coreg.run(P1,P2,[4],"nmi")
bold.nii -> T1w.nii w. nmi, 4mm samp. & 5x5 hist. smo.
0.4885 0 0 0 0 0 | -1.0011
0.4885 0.5516 0 0 0 0 | -1.0011
0.4885 0.5516 0 0 0 0 | -1.0011
0.4885 0.5516 0 0.1212 0 0 | -1.0012
0.4885 0.5516 0 0.1212 0 0 | -1.0012
0.4885 0.5516 0 0.1212 0 0 | -1.0012
0.497 0.5516 0 0.1212 0 0 | -1.0012
0.497 0.8482 0 0.1212 0 0 | -1.0012
0.497 0.8482 0.03426 0.1212 0 0 | -1.0012
0.497 0.8482 0.03426 0.1219 0 0 | -1.0012
0.497 0.8482 0.03426 0.1219 0 0 | -1.0012
0.497 0.8482 0.03426 0.1219 0 0 | -1.0012
0.5084 1.244 0.08003 0.1227 0 0 | -1.0012
0.5084 1.244 0.08003 0.1227 0 0 | -1.0012
0.5085 1.246 0.08019 0.1227 0 0 | -1.0012
0.5085 1.246 0.08019 0.1227 0 0 | -1.0012
0.5085 1.246 0.08019 0.1227 0 0 | -1.0012
0.5085 1.246 0.08019 0.1227 0 0 | -1.0012
0.5085 1.246 0.08019 0.1227 0 0 | -1.0012
([0.5084690641189673, 1.2458319387515466, 0.08018609030614379, 0.12270502915244379, 0.0, 0.0], -1.0012251f0)
julia> A = SPM.Coreg.spm_matrix(x)
4×4 Array{Float64,2}:
1.0 0.0 0.0 0.508469
0.0 0.992481 0.122397 1.24583
0.0 -0.122397 0.992481 0.0801861
0.0 0.0 0.0 1.0