ClosedFileSystemException when including resources into a native compile

[Artur-]

When trying out https://github.com/vaadin/hilla and https://github.com/vaadin/flow together with the native support in Spring Boot 3, I ran into an issue on startup:

java.lang.RuntimeException: Unable to initialize com.vaadin.flow.spring.VaadinServletContextInitializer$ErrorParameterServletContextListener
	at com.vaadin.flow.spring.VaadinServletContextInitializer$FailFastServletContextListener.contextInitialized(VaadinServletContextInitializer.java:191) ~[hilla-native:na]
	at com.vaadin.flow.spring.VaadinServletContextInitializer$CompositeServletContextListener.lambda$contextInitialized$0(VaadinServletContextInitializer.java:213) ~[na:na]
	at java.base@19.0.1/java.util.ArrayList.forEach(ArrayList.java:1511) ~[hilla-native:na]
	at com.vaadin.flow.spring.VaadinServletContextInitializer$CompositeServletContextListener.contextInitialized(VaadinServletContextInitializer.java:213) ~[na:na]
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716) ~[hilla-native:10.0.27]
...
Caused by: org.springframework.beans.factory.BeanDefinitionStoreException: Failed to read candidate component class: file [/com/vaadin/flow/router/AfterNavigationEvent.class]
	at org.springframework.context.annotation.ClassPathScanningCandidateComponentProvider.scanCandidateComponents(ClassPathScanningCandidateComponentProvider.java:462) ~[hilla-native:6.0.0-RC2]
	at org.springframework.context.annotation.ClassPathScanningCandidateComponentProvider.findCandidateComponents(ClassPathScanningCandidateComponentProvider.java:316) ~[hilla-native:6.0.0-RC2]
	at java.base@19.0.1/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:197) ~[na:na]
...
Caused by: java.nio.file.ClosedFileSystemException: null
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourceFileSystem.ensureOpen(NativeImageResourceFileSystem.java:142) ~[na:na]
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourceFileSystem.newInputStream(NativeImageResourceFileSystem.java:742) ~[na:na]
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourcePath.newInputStream(NativeImageResourcePath.java:851) ~[na:na]
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourceFileSystemProvider.newInputStream(NativeImageResourceFileSystemProvider.java:214) ~[hilla-native:na]
	at java.base@19.0.1/java.nio.file.Files.newInputStream(Files.java:160) ~[na:na]
	at org.springframework.core.io.FileSystemResource.getInputStream(FileSystemResource.java:192) ~[na:na]
	at org.springframework.core.type.classreading.SimpleMetadataReader.getClassReader(SimpleMetadataReader.java:54) ~[na:na]
	at org.springframework.core.type.classreading.SimpleMetadataReader.<init>(SimpleMetadataReader.java:48) ~[na:na]
	at org.springframework.core.type.classreading.SimpleMetadataReaderFactory.getMetadataReader(SimpleMetadataReaderFactory.java:103) ~[hilla-native:6.0.0-RC2]
	at org.springframework.core.type.classreading.CachingMetadataReaderFactory.getMetadataReader(CachingMetadataReaderFactory.java:122) ~[na:na]

The code in VaadinServletContextInitializer.java:191 is

} catch (Exception e) {
...
                    throw new RuntimeException(
                            "Unable to initialize " + this.getClass().getName(),
                            e);

and the exception it catches is

org.springframework.beans.factory.BeanDefinitionStoreException: Failed to read candidate component class: file [/com/vaadin/flow/router/AfterNavigationEvent.class]
	at org.springframework.context.annotation.ClassPathScanningCandidateComponentProvider.scanCandidateComponents(ClassPathScanningCandidateComponentProvider.java:462)
	at org.springframework.context.annotation.ClassPathScanningCandidateComponentProvider.findCandidateComponents(ClassPathScanningCandidateComponentProvider.java:316)
	at java.base@19.0.1/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:197)
	at java.base@19.0.1/java.util.HashMap$KeySpliterator.forEachRemaining(HashMap.java:1715)
	at java.base@19.0.1/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:509)
	at java.base@19.0.1/java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:499)
	at java.base@19.0.1/java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:921)
	at java.base@19.0.1/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
	at java.base@19.0.1/java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:682)
	at com.vaadin.flow.spring.VaadinServletContextInitializer$ErrorParameterServletContextListener.failFastContextInitialized(VaadinServletContextInitializer.java:369)
...
Caused by: java.nio.file.ClosedFileSystemException
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourceFileSystem.ensureOpen(NativeImageResourceFileSystem.java:142)
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourceFileSystem.newInputStream(NativeImageResourceFileSystem.java:742)
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourcePath.newInputStream(NativeImageResourcePath.java:851)
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.jdk.resources.NativeImageResourceFileSystemProvider.newInputStream(NativeImageResourceFileSystemProvider.java:214)
	at java.base@19.0.1/java.nio.file.Files.newInputStream(Files.java:160)
	at org.springframework.core.io.FileSystemResource.getInputStream(FileSystemResource.java:192)
	at org.springframework.core.type.classreading.SimpleMetadataReader.getClassReader(SimpleMetadataReader.java:54)

The flow-server.jar has resources in com/vaadin/flow/component, com/vaadin/flow/router and com/vaadin/flow/server and to make testing easier I included

hints.resources().registerPattern("com/vaadin/flow/*");

in a RuntimeHintsRegistrar and this seems to trigger the problem. If I restrict the pattern to com/vaadin/flow/server/* then I do not see the problem. Probably because the mentioned class com/vaadin/flow/router/AfterNavigationEvent.class is not included as a resource

Example project at https://github.com/Artur-/hilla-native/tree/closedfilesystemexception

[snicoll]

@Artur- thanks for the report, I believe this could have been a duplicate of #29397 but you're already using the version with that fix. We'll have another look.

[Artur-]

I believe I am using Spring 6.0.0-RC2 and the fix is marked for 6.0.0-RC3?

[snicoll]

Indeed, sorry. It might be a duplicate after all. Can you please try with either 3.0.0-SNAPSHOT or by setting spring-framework.version to 6.0.0-RC3?

[Artur-]

Using <spring-framework.version>6.0.0-RC3</spring-framework.version> indeed seems to solve this problem, thanks.
I do run into other errors about missing classes but those are probably my fault

[snicoll]

Thanks for checking and reporting back.