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Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.

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ssi-dk/BPS_FBI_FSC_VirulenceFinder

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BPS_FBI_FSC_VirulenceFinder

Bash scripts to run virulencefinder and serotypefinder in local settings on fasta and fastq.gz files

How to use:

To start open the config file, fill it in with your local system paths, and save it

bash install.sh
bash run_virulencefinder.sh
bash cleanup.sh

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Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.

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